Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZRJ entry

There are 12 chains in PDB entry 9ZRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 46	PHE 474
B	ARG 45	PHE 474
C	ALA 46	PHE 474
D	ALA 46	PHE 474
E	ARG 45	PHE 474
F	ALA 46	PHE 474
G	UNK 1	UNK 9
H	UNK 1	UNK 9
I	UNK 1	UNK 9
J	UNK 1	UNK 9
K	UNK 1	UNK 9
L	UNK 1	UNK 9

There are 68 helices in PDB entry 9ZRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	59	Right-handed alpha
Helix 2	AA2	A	117	122	Right-handed alpha
Helix 3	AA3	A	184	188	Right-handed 310
Helix 4	AA4	A	222	226	Right-handed 310
Helix 5	AA5	A	260	272	Right-handed alpha
Helix 6	AA6	A	293	299	Right-handed alpha
Helix 7	AA7	A	318	323	Right-handed alpha
Helix 8	AA8	A	341	352	Right-handed alpha
Helix 9	AA9	A	380	387	Right-handed alpha
Helix 10	AB1	A	399	407	Right-handed alpha
Helix 11	AB2	A	421	428	Right-handed alpha
Helix 12	AB3	A	446	454	Right-handed alpha
Helix 13	AB4	B	46	59	Right-handed alpha
Helix 14	AB5	B	117	122	Right-handed alpha
Helix 15	AB6	B	184	188	Right-handed 310
Helix 16	AB7	B	222	226	Right-handed 310
Helix 17	AB8	B	260	272	Right-handed alpha
Helix 18	AB9	B	292	300	Right-handed alpha
Helix 19	AC1	B	318	324	Right-handed alpha
Helix 20	AC2	B	341	351	Right-handed alpha
Helix 21	AC3	B	380	387	Right-handed alpha
Helix 22	AC4	B	399	406	Right-handed alpha
Helix 23	AC5	B	421	426	Right-handed alpha
Helix 24	AC6	B	446	454	Right-handed alpha
Helix 25	AC7	C	47	59	Right-handed alpha
Helix 26	AC8	C	184	188	Right-handed 310
Helix 27	AC9	C	222	226	Right-handed 310
Helix 28	AD1	C	260	273	Right-handed alpha
Helix 29	AD2	C	292	299	Right-handed alpha
Helix 30	AD3	C	318	324	Right-handed alpha
Helix 31	AD4	C	341	352	Right-handed alpha
Helix 32	AD5	C	380	387	Right-handed alpha
Helix 33	AD6	C	399	407	Right-handed alpha
Helix 34	AD7	C	423	427	Right-handed 310
Helix 35	AD8	C	446	454	Right-handed alpha
Helix 36	AD9	D	47	59	Right-handed alpha
Helix 37	AE1	D	117	122	Right-handed alpha
Helix 38	AE2	D	184	188	Right-handed 310
Helix 39	AE3	D	222	226	Right-handed 310
Helix 40	AE4	D	260	273	Right-handed alpha
Helix 41	AE5	D	292	299	Right-handed alpha
Helix 42	AE6	D	318	324	Right-handed alpha
Helix 43	AE7	D	341	352	Right-handed alpha
Helix 44	AE8	D	380	386	Right-handed alpha
Helix 45	AE9	D	399	406	Right-handed alpha
Helix 46	AF1	D	421	426	Right-handed alpha
Helix 47	AF2	D	446	453	Right-handed alpha
Helix 48	AF3	E	46	59	Right-handed alpha
Helix 49	AF4	E	117	122	Right-handed alpha
Helix 50	AF5	E	184	188	Right-handed 310
Helix 51	AF6	E	260	273	Right-handed alpha
Helix 52	AF7	E	292	300	Right-handed alpha
Helix 53	AF8	E	318	324	Right-handed alpha
Helix 54	AF9	E	341	350	Right-handed alpha
Helix 55	AG1	E	380	387	Right-handed alpha
Helix 56	AG2	E	399	406	Right-handed alpha
Helix 57	AG3	E	424	428	Right-handed 310
Helix 58	AG4	E	446	454	Right-handed alpha
Helix 59	AG5	F	47	59	Right-handed alpha
Helix 60	AG6	F	117	122	Right-handed alpha
Helix 61	AG7	F	169	173	Right-handed 310
Helix 62	AG8	F	260	271	Right-handed alpha
Helix 63	AG9	F	292	299	Right-handed alpha
Helix 64	AH1	F	341	352	Right-handed alpha
Helix 65	AH2	F	380	386	Right-handed alpha
Helix 66	AH3	F	399	406	Right-handed alpha
Helix 67	AH4	F	421	426	Right-handed alpha
Helix 68	AH5	F	446	453	Right-handed alpha

There are 35 sheets in PDB entry 9ZRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	69	first strand
Strand 2	A	93	104	anti-parallel
Strand 3	A	111	116	anti-parallel
Strand 4	A	150	156	anti-parallel
Strand 5	A	136	145	anti-parallel
Strand 6	A	126	130	anti-parallel
Strand 7	A	62	69	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	183	first strand
Strand 2	A	191	202	anti-parallel
Strand 3	A	214	217	anti-parallel
Strand 4	A	255	259	anti-parallel
Strand 5	A	237	244	anti-parallel
Strand 6	A	229	232	anti-parallel
Strand 7	A	178	183	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	311	314	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	357	364	anti-parallel
Strand 4	A	367	374	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	415	420	anti-parallel
Strand 3	A	435	439	anti-parallel
Strand 4	A	442	443	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	415	420	anti-parallel
Strand 3	A	435	439	anti-parallel
Strand 4	A	459	465	anti-parallel
Strand 5	A	468	474	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	69	first strand
Strand 2	B	93	104	anti-parallel
Strand 3	B	111	116	anti-parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	136	145	anti-parallel
Strand 6	B	126	130	anti-parallel
Strand 7	B	62	69	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	183	first strand
Strand 2	B	191	202	anti-parallel
Strand 3	B	214	217	anti-parallel
Strand 4	B	255	259	anti-parallel
Strand 5	B	237	244	anti-parallel
Strand 6	B	229	231	anti-parallel
Strand 7	B	178	183	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	311	314	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	330	334	anti-parallel
Strand 3	B	357	364	anti-parallel
Strand 4	B	367	374	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	397	first strand
Strand 2	B	415	420	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	435	439	anti-parallel
Strand 3	B	459	465	anti-parallel
Strand 4	B	468	474	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	126	130	anti-parallel
Strand 3	C	62	69	anti-parallel
Strand 4	C	93	104	anti-parallel
Strand 5	C	111	116	anti-parallel
Strand 6	C	150	156	anti-parallel
Strand 7	C	140	145	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	183	first strand
Strand 2	C	191	202	anti-parallel
Strand 3	C	214	217	anti-parallel
Strand 4	C	255	258	anti-parallel
Strand 5	C	237	244	anti-parallel
Strand 6	C	229	231	anti-parallel
Strand 7	C	178	183	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	280	first strand
Strand 2	C	376	377	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	311	313	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	334	first strand
Strand 2	C	357	364	anti-parallel
Strand 3	C	367	374	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	397	first strand
Strand 2	C	415	420	anti-parallel
Strand 3	C	435	439	anti-parallel
Strand 4	C	442	443	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	397	first strand
Strand 2	C	415	420	anti-parallel
Strand 3	C	435	439	anti-parallel
Strand 4	C	459	464	anti-parallel
Strand 5	C	469	474	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	138	first strand
Strand 2	D	126	130	anti-parallel
Strand 3	D	62	69	anti-parallel
Strand 4	D	93	104	anti-parallel
Strand 5	D	112	116	anti-parallel
Strand 6	D	150	155	anti-parallel
Strand 7	D	140	145	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	4	first strand
Strand 2	D	237	245	anti-parallel
Strand 3	D	255	259	anti-parallel
Strand 4	D	215	217	anti-parallel
Strand 5	D	191	200	anti-parallel
Strand 6	D	178	183	anti-parallel
Strand 7	D	229	231	anti-parallel
Strand 8	D	237	245	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	311	314	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	334	first strand
Strand 2	D	357	364	anti-parallel
Strand 3	D	367	374	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	396	first strand
Strand 2	D	416	419	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	439	first strand
Strand 2	D	459	465	anti-parallel
Strand 3	D	468	474	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	69	first strand
Strand 2	E	93	104	anti-parallel
Strand 3	E	111	116	anti-parallel
Strand 4	E	150	156	anti-parallel
Strand 5	E	137	145	anti-parallel
Strand 6	E	126	130	anti-parallel
Strand 7	E	62	69	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	E	237	244	anti-parallel
Strand 3	E	255	259	anti-parallel
Strand 4	E	214	217	anti-parallel
Strand 5	E	191	202	anti-parallel
Strand 6	E	178	183	anti-parallel
Strand 7	E	229	231	anti-parallel
Strand 8	E	237	244	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	311	314	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	338	first strand
Strand 2	E	330	334	anti-parallel
Strand 3	E	357	364	anti-parallel
Strand 4	E	367	374	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	396	first strand
Strand 2	E	415	420	anti-parallel
Strand 3	E	435	439	anti-parallel
Strand 4	E	459	465	anti-parallel
Strand 5	E	468	474	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	69	first strand
Strand 2	F	93	104	anti-parallel
Strand 3	F	111	116	anti-parallel
Strand 4	F	150	156	anti-parallel
Strand 5	F	136	145	anti-parallel
Strand 6	F	126	130	anti-parallel
Strand 7	F	62	69	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	195	first strand
Strand 2	F	179	183	anti-parallel
Strand 3	F	229	231	anti-parallel
Strand 4	F	237	244	anti-parallel
Strand 5	F	255	259	anti-parallel
Strand 6	F	214	217	anti-parallel
Strand 7	F	197	202	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	285	first strand
Strand 2	F	311	314	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	334	first strand
Strand 2	F	357	364	anti-parallel
Strand 3	F	367	374	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	393	396	first strand
Strand 2	F	415	420	anti-parallel
Strand 3	F	435	439	anti-parallel
Strand 4	F	459	463	anti-parallel
Strand 5	F	470	474	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZRJ