Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZUB entry

There are 12 chains in PDB entry 9ZUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1ARG 369
B
 ILE 370GLN 605
C
 TYR 1LEU 6
C
 PHE 9LEU 14
C
 ARG 16ARG 16
C
 CYS 18MET 19
C
 LYS 22PHE 25
C
 ALA 28ARG 29
C
 VAL 31PHE 32
C
 ASN 34THR 35
C
 ARG 37THR 39
C
 PHE 41THR 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9ZUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 35Right-handed alpha
Helix 2
AA2
A
114 124Right-handed alpha
Helix 3
AA3
A
172 176Right-handed 310
Helix 4
AA4
A
204 215Right-handed alpha
Helix 5
AA5
A
295 306Right-handed alpha
Helix 6
AA6
B
411 416Right-handed 310
Helix 7
AA7
B
420 422Right-handed 310
Helix 8
AA8
B
432 436Right-handed 310
Helix 9
AA9
B
523 531Right-handed alpha
Helix 10
AB1
B
596 605Right-handed alpha
Helix 11
AB2
C
13 18Right-handed alpha
Helix 12
AB3
C
24 33Right-handed alpha
Helix 13
AB4
C
34 46Right-handed alpha
Helix 14
AB5
C
90 95Right-handed 310
Helix 15
AB6
C
219 223Right-handed 310
Helix 16
AB7
C
292 302Right-handed alpha
Helix 17
AB8
C
332 339Right-handed alpha
Helix 18
AB9
C
404 412Right-handed alpha
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There are 14 sheets in PDB entry 9ZUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
76 80anti-parallel
Strand 3
A
40 44anti-parallel
Strand 4
A
57 61anti-parallel
Strand 5
A
16 20anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
70 71anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
105 111anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
159 161anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
236 241anti-parallel
Strand 5
A
195 201anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
250 251anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 283first strand
Strand 2
A
341 351anti-parallel
Strand 3
A
311 314anti-parallel
Strand 4
A
328 332anti-parallel
Strand 5
A
286 291anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 428first strand
Strand 2
B
384 389anti-parallel
Strand 3
B
395 402anti-parallel
Strand 4
B
407 410anti-parallel
Strand 5
B
464 468anti-parallel
Strand 6
B
445 450anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
515 518first strand
Strand 2
B
496 500anti-parallel
Strand 3
B
560 565anti-parallel
Strand 4
B
568 577anti-parallel
Strand 5
B
588 592anti-parallel
Strand 6
B
540 543anti-parallel
Strand 7
B
521 522anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 65first strand
Strand 2
C
68 72anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 101first strand
Strand 2
C
107 110anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 117first strand
Strand 2
C
124 126anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 186first strand
Strand 2
C
324 329anti-parallel
Strand 3
C
304 309anti-parallel
Strand 4
C
368 373anti-parallel
Strand 5
C
376 385anti-parallel
Strand 6
C
396 400anti-parallel
Strand 7
C
348 351anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 200first strand
Strand 2
C
206 210anti-parallel
Strand 3
C
215 218anti-parallel
Strand 4
C
271 275anti-parallel
Strand 5
C
246 255anti-parallel
Strand 6
C
229 233anti-parallel
Strand 7
C
195 200anti-parallel
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