Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZVM entry

There are 2 chains in PDB entry 9ZVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 73	PRO 521
D	ASP 73	PRO 521

There are 31 helices in PDB entry 9ZVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	81	93	Right-handed alpha
Helix 2	AA2	C	109	114	Right-handed alpha
Helix 3	AA3	C	132	141	Right-handed alpha
Helix 4	AA4	C	158	166	Right-handed alpha
Helix 5	AA5	C	176	183	Right-handed alpha
Helix 6	AA6	C	185	195	Right-handed alpha
Helix 7	AA7	C	210	222	Right-handed alpha
Helix 8	AA8	C	246	262	Right-handed alpha
Helix 9	AA9	C	318	337	Right-handed alpha
Helix 10	AB1	C	367	375	Right-handed alpha
Helix 11	AB2	C	379	386	Right-handed alpha
Helix 12	AB3	C	413	417	Right-handed 310
Helix 13	AB4	C	465	480	Right-handed alpha
Helix 14	AB5	C	488	496	Right-handed alpha
Helix 15	AB6	C	498	504	Right-handed alpha
Helix 16	AB7	D	81	93	Right-handed alpha
Helix 17	AB8	D	109	114	Right-handed alpha
Helix 18	AB9	D	125	129	Right-handed 310
Helix 19	AC1	D	132	141	Right-handed alpha
Helix 20	AC2	D	158	169	Right-handed alpha
Helix 21	AC3	D	176	183	Right-handed alpha
Helix 22	AC4	D	185	195	Right-handed alpha
Helix 23	AC5	D	210	222	Right-handed alpha
Helix 24	AC6	D	246	262	Right-handed alpha
Helix 25	AC7	D	318	337	Right-handed alpha
Helix 26	AC8	D	367	375	Right-handed alpha
Helix 27	AC9	D	379	387	Right-handed alpha
Helix 28	AD1	D	413	417	Right-handed 310
Helix 29	AD2	D	465	479	Right-handed alpha
Helix 30	AD3	D	488	496	Right-handed alpha
Helix 31	AD4	D	498	504	Right-handed alpha

There are 7 sheets in PDB entry 9ZVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	98	102	parallel
Strand 3	C	75	77	parallel
Strand 4	C	147	149	parallel
Strand 5	C	171	172	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	241	first strand
Strand 2	C	225	233	anti-parallel
Strand 3	C	267	271	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	360	first strand
Strand 2	C	340	348	anti-parallel
Strand 3	C	278	285	anti-parallel
Strand 4	C	291	303	anti-parallel
Strand 5	C	306	312	anti-parallel
Strand 6	C	403	410	anti-parallel
Strand 7	C	455	463	anti-parallel
Strand 8	C	436	440	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	481	482	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	98	102	parallel
Strand 3	D	75	77	parallel
Strand 4	D	147	149	parallel
Strand 5	D	171	172	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	240	first strand
Strand 2	D	225	233	anti-parallel
Strand 3	D	267	271	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	360	first strand
Strand 2	D	340	348	anti-parallel
Strand 3	D	277	285	anti-parallel
Strand 4	D	291	303	anti-parallel
Strand 5	D	306	312	anti-parallel
Strand 6	D	403	410	anti-parallel
Strand 7	D	455	463	anti-parallel
Strand 8	D	436	440	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZVM