Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZVV entry

There are 4 chains in PDB entry 9ZVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 9	GLU 278
B	ASN 8	GLU 278
D	LYS 9	GLU 279
C	ASN 8	GLU 278

There are 29 helices in PDB entry 9ZVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	36	Right-handed alpha
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	100	111	Right-handed alpha
Helix 4	AA4	A	116	137	Right-handed alpha
Helix 5	AA5	A	164	179	Right-handed alpha
Helix 6	AA6	A	191	201	Right-handed alpha
Helix 7	AA7	A	267	269	Right-handed 310
Helix 8	AA8	B	9	13	Right-handed alpha
Helix 9	AA9	B	19	38	Right-handed alpha
Helix 10	AB1	B	39	43	Right-handed 310
Helix 11	AB2	B	100	111	Right-handed alpha
Helix 12	AB3	B	116	137	Right-handed alpha
Helix 13	AB4	B	164	179	Right-handed alpha
Helix 14	AB5	B	191	200	Right-handed alpha
Helix 15	AB6	B	267	269	Right-handed 310
Helix 16	AB7	D	19	36	Right-handed alpha
Helix 17	AB8	D	39	44	Right-handed alpha
Helix 18	AB9	D	100	111	Right-handed alpha
Helix 19	AC1	D	116	137	Right-handed alpha
Helix 20	AC2	D	164	179	Right-handed alpha
Helix 21	AC3	D	191	201	Right-handed alpha
Helix 22	AC4	D	267	269	Right-handed 310
Helix 23	AC5	C	19	36	Right-handed alpha
Helix 24	AC6	C	39	43	Right-handed 310
Helix 25	AC7	C	100	110	Right-handed alpha
Helix 26	AC8	C	116	137	Right-handed alpha
Helix 27	AC9	C	164	179	Right-handed alpha
Helix 28	AD1	C	191	201	Right-handed alpha
Helix 29	AD2	C	267	269	Right-handed 310

There are 13 sheets in PDB entry 9ZVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	233	245	parallel
Strand 3	A	253	265	anti-parallel
Strand 4	A	92	99	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	84	89	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	271	275	parallel
Strand 3	A	222	227	anti-parallel
Strand 4	A	186	190	anti-parallel
Strand 5	A	212	214	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	233	245	parallel
Strand 3	B	253	265	anti-parallel
Strand 4	B	92	95	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	233	245	parallel
Strand 3	B	253	265	anti-parallel
Strand 4	B	98	99	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	84	89	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	271	275	parallel
Strand 3	B	222	227	anti-parallel
Strand 4	B	186	190	anti-parallel
Strand 5	B	212	214	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	233	245	parallel
Strand 3	D	253	265	anti-parallel
Strand 4	D	92	99	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	61	first strand
Strand 2	D	84	89	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	C	92	99	anti-parallel
Strand 3	C	253	265	anti-parallel
Strand 4	C	233	245	anti-parallel
Strand 5	C	46	47	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	156	first strand
Strand 2	D	271	275	parallel
Strand 3	D	222	227	anti-parallel
Strand 4	D	186	190	anti-parallel
Strand 5	D	212	214	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	61	first strand
Strand 2	C	84	89	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	271	275	parallel
Strand 3	C	222	227	anti-parallel
Strand 4	C	186	190	anti-parallel
Strand 5	C	212	214	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZVV