Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZXC entry

There are 3 chains in PDB entry 9ZXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -120TYR 1312
C
 GLU 4VAL 125
D
 ASP 2GLU 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9ZXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-110 -103Right-handed alpha
Helix 2
AA2
A
-49 -45Right-handed 310
Helix 3
AA3
A
25 56Right-handed alpha
Helix 4
AA4
A
61 80Right-handed alpha
Helix 5
AA5
A
80 90Right-handed alpha
Helix 6
AA6
A
97 132Right-handed alpha
Helix 7
AA7
A
139 160Right-handed alpha
Helix 8
AA8
A
160 166Right-handed alpha
Helix 9
AA9
A
190 204Right-handed alpha
Helix 10
AB1
A
204 245Right-handed alpha
Helix 11
AB2
A
249 267Right-handed alpha
Helix 12
AB3
A
280 306Right-handed alpha
Helix 13
AB4
A
308 317Right-handed alpha
Helix 14
AB5
A
318 327Right-handed alpha
Helix 15
AB6
A
327 340Right-handed alpha
Helix 16
AB7
A
1236 1268Right-handed alpha
Helix 17
AB8
A
1274 1292Right-handed alpha
Helix 18
AB9
A
1293 1298Right-handed alpha
Helix 19
AC1
A
1299 1306Right-handed alpha
Helix 20
AC2
A
1306 1311Right-handed alpha
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There are 11 sheets in PDB entry 9ZXC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-115 -112first strand
Strand 2
A
-58 -53anti-parallel
Strand 3
A
-68 -64anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-90 -84first strand
Strand 2
A
-102 -96anti-parallel
Strand 3
A
-43 -37anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-30 -29first strand
Strand 2
A
182 183parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
177 179anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 10first strand
Strand 2
C
20 28anti-parallel
Strand 3
C
81 87anti-parallel
Strand 4
C
71 76anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
48 55anti-parallel
Strand 3
C
35 42anti-parallel
Strand 4
C
100 103anti-parallel
Strand 5
C
116 117anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
48 55anti-parallel
Strand 3
C
35 42anti-parallel
Strand 4
C
95 98anti-parallel
Strand 5
C
121 123anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
20 26anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
63 68anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
105 106parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
46 50anti-parallel
Strand 3
D
36 39anti-parallel
Strand 4
D
86 88anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 91first strand
Strand 2
D
99 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il