Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZY0 entry

There are 5 chains in PDB entry 9ZY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 215
B
 VAL 5GLU 154
C
 MET 1SER 183
D
 U 1 U 8
E
 A 7 A 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9ZY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
101 110Right-handed alpha
Helix 4
AA4
A
118 128Right-handed alpha
Helix 5
AA5
A
137 142Right-handed 310
Helix 6
AA6
A
147 160Right-handed alpha
Helix 7
AA7
A
206 211Right-handed alpha
Helix 8
AA8
B
6 15Right-handed alpha
Helix 9
AA9
B
15 23Right-handed alpha
Helix 10
AB1
B
36 50Right-handed alpha
Helix 11
AB2
B
82 84Right-handed 310
Helix 12
AB3
B
128 135Right-handed alpha
Helix 13
AB4
B
136 149Right-handed alpha
Helix 14
AB5
C
5 13Right-handed alpha
Helix 15
AB6
C
54 67Right-handed alpha
Helix 16
AB7
C
85 99Right-handed alpha
Helix 17
AB8
C
116 129Right-handed alpha
Helix 18
AB9
C
137 148Right-handed alpha
Helix 19
AC1
C
158 183Right-handed alpha
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There are 3 sheets in PDB entry 9ZY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
7 15anti-parallel
Strand 6
B
64 70anti-parallel
Strand 7
B
55 59anti-parallel
Strand 8
B
25 28anti-parallel
Strand 9
B
120 127anti-parallel
Strand 10
B
106 115anti-parallel
Strand 11
B
94 103anti-parallel
Strand 12
B
86 87anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
97 99anti-parallel
Strand 6
B
94 103parallel
Strand 7
B
86 87anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 47first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
74 82anti-parallel
Strand 4
C
102 110parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il