Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZYR entry

There are 4 chains in PDB entry 9ZYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 40	LYS 1104
B	ASP 40	LYS 1104
C	ASP 40	LYS 1104
D	ASP 40	LYS 1104

There are176 helices in PDB entry 9ZYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	49	Right-handed alpha
Helix 2	AA2	A	125	136	Right-handed alpha
Helix 3	AA3	A	158	176	Right-handed alpha
Helix 4	AA4	A	187	203	Right-handed alpha
Helix 5	AA5	A	275	287	Right-handed alpha
Helix 6	AA6	A	309	322	Right-handed alpha
Helix 7	AA7	A	335	346	Right-handed alpha
Helix 8	AA8	A	350	362	Right-handed alpha
Helix 9	AA9	A	364	369	Right-handed alpha
Helix 10	AB1	A	370	387	Right-handed alpha
Helix 11	AB2	A	402	419	Right-handed alpha
Helix 12	AB3	A	425	437	Right-handed alpha
Helix 13	AB4	A	438	446	Right-handed alpha
Helix 14	AB5	A	459	468	Right-handed alpha
Helix 15	AB6	A	470	480	Right-handed alpha
Helix 16	AB7	A	483	488	Right-handed alpha
Helix 17	AB8	A	489	500	Right-handed alpha
Helix 18	AB9	A	502	516	Right-handed alpha
Helix 19	AC1	A	518	534	Right-handed alpha
Helix 20	AC2	A	559	571	Right-handed alpha
Helix 21	AC3	A	573	582	Right-handed alpha
Helix 22	AC4	A	586	603	Right-handed alpha
Helix 23	AC5	A	608	636	Right-handed alpha
Helix 24	AC6	A	637	645	Right-handed alpha
Helix 25	AC7	A	649	654	Right-handed alpha
Helix 26	AC8	A	655	664	Right-handed alpha
Helix 27	AC9	A	667	670	Right-handed 310
Helix 28	AD1	A	671	683	Right-handed alpha
Helix 29	AD2	A	691	701	Right-handed alpha
Helix 30	AD3	A	701	708	Right-handed alpha
Helix 31	AD4	A	723	733	Right-handed alpha
Helix 32	AD5	A	733	758	Right-handed alpha
Helix 33	AD6	A	765	790	Right-handed alpha
Helix 34	AD7	A	791	795	Right-handed 310
Helix 35	AD8	A	796	818	Right-handed alpha
Helix 36	AD9	A	821	843	Right-handed alpha
Helix 37	AE1	A	844	849	Right-handed 310
Helix 38	AE2	A	853	890	Right-handed alpha
Helix 39	AE3	A	898	911	Right-handed alpha
Helix 40	AE4	A	952	987	Right-handed alpha
Helix 41	AE5	A	990	1008	Right-handed alpha
Helix 42	AE6	A	1015	1025	Right-handed alpha
Helix 43	AE7	A	1051	1073	Right-handed alpha
Helix 44	AE8	A	1078	1104	Right-handed alpha
Helix 45	AE9	B	41	49	Right-handed alpha
Helix 46	AF1	B	125	136	Right-handed alpha
Helix 47	AF2	B	158	176	Right-handed alpha
Helix 48	AF3	B	187	203	Right-handed alpha
Helix 49	AF4	B	275	287	Right-handed alpha
Helix 50	AF5	B	309	322	Right-handed alpha
Helix 51	AF6	B	335	346	Right-handed alpha
Helix 52	AF7	B	350	362	Right-handed alpha
Helix 53	AF8	B	364	369	Right-handed alpha
Helix 54	AF9	B	370	387	Right-handed alpha
Helix 55	AG1	B	402	419	Right-handed alpha
Helix 56	AG2	B	425	437	Right-handed alpha
Helix 57	AG3	B	438	446	Right-handed alpha
Helix 58	AG4	B	459	468	Right-handed alpha
Helix 59	AG5	B	470	480	Right-handed alpha
Helix 60	AG6	B	483	488	Right-handed alpha
Helix 61	AG7	B	489	500	Right-handed alpha
Helix 62	AG8	B	502	516	Right-handed alpha
Helix 63	AG9	B	518	534	Right-handed alpha
Helix 64	AH1	B	559	571	Right-handed alpha
Helix 65	AH2	B	573	582	Right-handed alpha
Helix 66	AH3	B	586	603	Right-handed alpha
Helix 67	AH4	B	608	636	Right-handed alpha
Helix 68	AH5	B	637	645	Right-handed alpha
Helix 69	AH6	B	649	654	Right-handed alpha
Helix 70	AH7	B	655	664	Right-handed alpha
Helix 71	AH8	B	667	670	Right-handed 310
Helix 72	AH9	B	671	683	Right-handed alpha
Helix 73	AI1	B	691	701	Right-handed alpha
Helix 74	AI2	B	701	708	Right-handed alpha
Helix 75	AI3	B	723	733	Right-handed alpha
Helix 76	AI4	B	733	758	Right-handed alpha
Helix 77	AI5	B	765	790	Right-handed alpha
Helix 78	AI6	B	791	795	Right-handed 310
Helix 79	AI7	B	796	818	Right-handed alpha
Helix 80	AI8	B	821	843	Right-handed alpha
Helix 81	AI9	B	844	849	Right-handed 310
Helix 82	AJ1	B	853	890	Right-handed alpha
Helix 83	AJ2	B	898	911	Right-handed alpha
Helix 84	AJ3	B	952	987	Right-handed alpha
Helix 85	AJ4	B	990	1008	Right-handed alpha
Helix 86	AJ5	B	1015	1025	Right-handed alpha
Helix 87	AJ6	B	1051	1073	Right-handed alpha
Helix 88	AJ7	B	1078	1104	Right-handed alpha
Helix 89	AJ8	C	41	49	Right-handed alpha
Helix 90	AJ9	C	125	136	Right-handed alpha
Helix 91	AK1	C	158	176	Right-handed alpha
Helix 92	AK2	C	187	203	Right-handed alpha
Helix 93	AK3	C	275	287	Right-handed alpha
Helix 94	AK4	C	309	322	Right-handed alpha
Helix 95	AK5	C	335	346	Right-handed alpha
Helix 96	AK6	C	350	362	Right-handed alpha
Helix 97	AK7	C	364	369	Right-handed alpha
Helix 98	AK8	C	370	387	Right-handed alpha
Helix 99	AK9	C	402	419	Right-handed alpha
Helix 100	AL1	C	425	437	Right-handed alpha
Helix 101	AL2	C	438	446	Right-handed alpha
Helix 102	AL3	C	459	468	Right-handed alpha
Helix 103	AL4	C	470	480	Right-handed alpha
Helix 104	AL5	C	483	488	Right-handed alpha
Helix 105	AL6	C	489	500	Right-handed alpha
Helix 106	AL7	C	502	516	Right-handed alpha
Helix 107	AL8	C	518	534	Right-handed alpha
Helix 108	AL9	C	559	571	Right-handed alpha
Helix 109	AM1	C	573	582	Right-handed alpha
Helix 110	AM2	C	586	603	Right-handed alpha
Helix 111	AM3	C	608	636	Right-handed alpha
Helix 112	AM4	C	637	645	Right-handed alpha
Helix 113	AM5	C	649	654	Right-handed alpha
Helix 114	AM6	C	655	664	Right-handed alpha
Helix 115	AM7	C	667	670	Right-handed 310
Helix 116	AM8	C	671	683	Right-handed alpha
Helix 117	AM9	C	691	701	Right-handed alpha
Helix 118	AN1	C	701	708	Right-handed alpha
Helix 119	AN2	C	723	733	Right-handed alpha
Helix 120	AN3	C	733	758	Right-handed alpha
Helix 121	AN4	C	765	790	Right-handed alpha
Helix 122	AN5	C	791	795	Right-handed 310
Helix 123	AN6	C	796	818	Right-handed alpha
Helix 124	AN7	C	821	843	Right-handed alpha
Helix 125	AN8	C	844	849	Right-handed 310
Helix 126	AN9	C	853	890	Right-handed alpha
Helix 127	AO1	C	898	911	Right-handed alpha
Helix 128	AO2	C	952	987	Right-handed alpha
Helix 129	AO3	C	990	1008	Right-handed alpha
Helix 130	AO4	C	1015	1025	Right-handed alpha
Helix 131	AO5	C	1051	1073	Right-handed alpha
Helix 132	AO6	C	1078	1104	Right-handed alpha
Helix 133	AO7	D	41	49	Right-handed alpha
Helix 134	AO8	D	125	136	Right-handed alpha
Helix 135	AO9	D	158	176	Right-handed alpha
Helix 136	AP1	D	187	203	Right-handed alpha
Helix 137	AP2	D	275	287	Right-handed alpha
Helix 138	AP3	D	309	322	Right-handed alpha
Helix 139	AP4	D	335	346	Right-handed alpha
Helix 140	AP5	D	350	362	Right-handed alpha
Helix 141	AP6	D	364	369	Right-handed alpha
Helix 142	AP7	D	370	387	Right-handed alpha
Helix 143	AP8	D	402	419	Right-handed alpha
Helix 144	AP9	D	425	437	Right-handed alpha
Helix 145	AQ1	D	438	446	Right-handed alpha
Helix 146	AQ2	D	459	468	Right-handed alpha
Helix 147	AQ3	D	470	480	Right-handed alpha
Helix 148	AQ4	D	483	488	Right-handed alpha
Helix 149	AQ5	D	489	500	Right-handed alpha
Helix 150	AQ6	D	502	516	Right-handed alpha
Helix 151	AQ7	D	518	534	Right-handed alpha
Helix 152	AQ8	D	559	571	Right-handed alpha
Helix 153	AQ9	D	573	582	Right-handed alpha
Helix 154	AR1	D	586	603	Right-handed alpha
Helix 155	AR2	D	608	636	Right-handed alpha
Helix 156	AR3	D	637	645	Right-handed alpha
Helix 157	AR4	D	649	654	Right-handed alpha
Helix 158	AR5	D	655	664	Right-handed alpha
Helix 159	AR6	D	667	670	Right-handed 310
Helix 160	AR7	D	671	683	Right-handed alpha
Helix 161	AR8	D	691	701	Right-handed alpha
Helix 162	AR9	D	701	708	Right-handed alpha
Helix 163	AS1	D	723	733	Right-handed alpha
Helix 164	AS2	D	733	758	Right-handed alpha
Helix 165	AS3	D	765	790	Right-handed alpha
Helix 166	AS4	D	791	795	Right-handed 310
Helix 167	AS5	D	796	818	Right-handed alpha
Helix 168	AS6	D	821	843	Right-handed alpha
Helix 169	AS7	D	844	849	Right-handed 310
Helix 170	AS8	D	853	890	Right-handed alpha
Helix 171	AS9	D	898	911	Right-handed alpha
Helix 172	AT1	D	952	987	Right-handed alpha
Helix 173	AT2	D	990	1008	Right-handed alpha
Helix 174	AT3	D	1015	1025	Right-handed alpha
Helix 175	AT4	D	1051	1073	Right-handed alpha
Helix 176	AT5	D	1078	1104	Right-handed alpha

There are 16 sheets in PDB entry 9ZYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	82	84	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	260	263	parallel
Strand 3	A	213	216	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	303	305	parallel
Strand 3	A	326	328	parallel
Strand 4	A	392	393	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	82	84	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	260	263	parallel
Strand 3	B	213	216	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	303	305	parallel
Strand 3	B	326	328	parallel
Strand 4	B	392	393	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	53	first strand
Strand 2	C	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	82	84	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	260	263	parallel
Strand 3	C	213	216	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	303	305	parallel
Strand 3	C	326	328	parallel
Strand 4	C	392	393	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	82	84	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	260	263	parallel
Strand 3	D	213	216	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	303	305	parallel
Strand 3	D	326	328	parallel
Strand 4	D	392	393	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZYR