Analysis of Ligand-Protein Contacts in PDB entry:
1IP8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 46 ligands in PDB entry 1IP8. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
OMU
A
516 1O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 2
7MG
A
527 17N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 3
OMG
A
966 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 4
OMC
A
967 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 5
OMG
A
1207 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 6
OMC
A
1402 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 7
OMC
A
1407 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 8
OMU
A
1498 1O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 9
OMG
A
1516 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 10
MA6
A
1518 16N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 11
MA6
A
1519 16N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 12
2MG
C
1810 12N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 13
H2U
C
1816 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 14
H2U
C
1817 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 15
M2G
C
1826 1N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 16
OMC
C
1832 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 17
OMG
C
1834 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 18
YG
C
1837 1WYBUTOSINE
lig 19
PSU
C
1839 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 20
5MC
C
1840 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 21
5MC
C
1865 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 22
5MU
C
1870 15-METHYLURIDINE 5'-MONOPHOSPHATE
lig 23
PSU
C
1871 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 24
1MA
C
1874 16-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 25
2MG
D
1910 12N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 26
H2U
D
1916 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 27
H2U
D
1917 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 28
M2G
D
1926 1N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 29
OMC
D
1932 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 30
OMG
D
1934 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 31
YG
D
1937 1WYBUTOSINE
lig 32
PSU
D
1939 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 33
5MC
D
1940 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 34
5MC
D
1965 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 35
5MU
D
1970 15-METHYLURIDINE 5'-MONOPHOSPHATE
lig 36
PSU
D
1971 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 37
1MA
D
1974 16-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 38
PSU
E
3911 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 39
OMU
E
3915 1O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 40
PSU
E
3917 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 41
2MU
E
3939 12',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE
lig 42
OMC
E
3962 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 43
OMC
E
4498 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 44
OMU
E
4552 1O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 45
GTP

1000 3GUANOSINE-5'-TRIPHOSPHATE
lig 46
TYR

2000 1TYROSINE