Analysis of Ligand-Protein Contacts in PDB entry:
1IPU


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 48 ligands in PDB entry 1IPU. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
2MG
C
1710 12N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
H2U
C
1716 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 3
H2U
C
1717 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 4
M2G
C
1726 1N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 5
OMC
C
1732 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
OMG
C
1734 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
YG
C
1737 1WYBUTOSINE
lig 8
PSU
C
1739 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 9
5MC
C
1740 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 10
5MC
C
1765 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 11
5MU
C
1770 15-METHYLURIDINE 5'-MONOPHOSPHATE
lig 12
PSU
C
1771 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 13
1MA
C
1774 16-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 14
2MG
D
1810 12N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 15
H2U
D
1816 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 16
H2U
D
1817 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 17
M2G
D
1826 1N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 18
OMC
D
1832 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 19
OMG
D
1834 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 20
YG
D
1837 1WYBUTOSINE
lig 21
PSU
D
1839 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 22
5MC
D
1840 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 23
5MC
D
1865 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 24
5MU
D
1870 15-METHYLURIDINE 5'-MONOPHOSPHATE
lig 25
PSU
D
1871 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 26
1MA
D
1874 16-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 27
2MG
E
1910 12N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 28
H2U
E
1916 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 29
H2U
E
1917 15,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 30
M2G
E
1926 1N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 31
OMC
E
1932 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 32
OMG
E
1934 1O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 33
YG
E
1937 1WYBUTOSINE
lig 34
PSU
E
1939 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 35
5MC
E
1940 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 36
5MC
E
1965 15-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 37
5MU
E
1970 15-METHYLURIDINE 5'-MONOPHOSPHATE
lig 38
PSU
E
1971 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 39
1MA
E
1974 16-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 40
PSU
F
3911 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 41
OMU
F
3915 1O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 42
PSU
F
3917 1PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 43
2MU
F
3939 12',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE
lig 44
OMC
F
3962 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 45
OMC
F
4498 1O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 46
OMU
F
4552 1O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 47
GTP

1000 3GUANOSINE-5'-TRIPHOSPHATE
lig 48
CYS

2000 1CYSTEINE