Analysis of Ligand-Protein Contacts in PDB entry:
1LGC


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 35 ligands in PDB entry 1LGC. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
G
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUC
G
6 10ALPHA-L-FUCOPYRANOSE
lig 7
GAL
G
7 11BETA-D-GALACTOPYRANOSE
lig 8
MAN
G
8 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
G
9 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
G
10 10ALPHA-L-FUCOPYRANOSE
lig 11
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 14
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 15
NAG
K
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
GAL
K
6 11BETA-D-GALACTOPYRANOSE
lig 17
SIA
K
7 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 18
MAN
K
8 11ALPHA-D-MANNOPYRANOSE
lig 19
FUC
K
9 10ALPHA-L-FUCOPYRANOSE
lig 20
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 23
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 24
NAG
L
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
GAL
L
6 11BETA-D-GALACTOPYRANOSE
lig 26
SIA
L
7 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 27
MAN
L
8 11ALPHA-D-MANNOPYRANOSE
lig 28
FUC
L
9 10ALPHA-L-FUCOPYRANOSE
lig 29
CA
A
301 1CALCIUM ION
lig 30
MN
A
302 1MANGANESE (II) ION
lig 31
CA
C
301 1CALCIUM ION
lig 32
MN
C
302 1MANGANESE (II) ION
lig 33
CA
E
301 1CALCIUM ION
lig 34
MN
E
302 1MANGANESE (II) ION
lig 35
MPD
E
303 8(4S)-2-METHYL-2,4-PENTANEDIOL