Analysis of Ligand-Protein Contacts in PDB entry:
1NRT


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 42 ligands in PDB entry 1NRT. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MG
A
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
H2U
A
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 3
H2U
A
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 4
M2G
A
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 5
OMC
A
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
OMG
A
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
YG
A
37 39WYBUTOSINE
lig 8
PSU
A
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 9
5MC
A
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 10
7MG
A
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 11
5MC
A
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 12
RT
A
54 21RIBOSYLTHYMINE-5'-MONOPHOSPHATE
lig 13
PSU
A
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 14
1MA
A
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 15
2MG
B
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 16
H2U
B
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 17
H2U
B
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 18
M2G
B
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 19
OMC
B
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 20
OMG
B
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 21
YG
B
37 39WYBUTOSINE
lig 22
PSU
B
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 23
5MC
B
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 24
7MG
B
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 25
5MC
B
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 26
RT
B
54 21RIBOSYLTHYMINE-5'-MONOPHOSPHATE
lig 27
PSU
B
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 28
1MA
B
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 29
2MG
C
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 30
H2U
C
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 31
H2U
C
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 32
M2G
C
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 33
OMC
C
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 34
OMG
C
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 35
YG
C
37 39WYBUTOSINE
lig 36
PSU
C
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 37
5MC
C
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 38
7MG
C
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 39
5MC
C
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 40
RT
C
54 21RIBOSYLTHYMINE-5'-MONOPHOSPHATE
lig 41
PSU
C
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 42
1MA
C
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE