Analysis of Ligand-Protein Contacts in PDB entry:
1QD8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 1QD8. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MLU
A
1 9N-METHYL-D-LEUCINE
lig 2
OMZ
A
2 14(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
lig 3
GHP
A
4 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 4
GHP
A
5 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 5
OMY
A
6 14(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
lig 6
3FG
A
7 13(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC AC
lig 7
MLU
B
1 9N-METHYL-D-LEUCINE
lig 8
OMZ
B
2 14(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
lig 9
GHP
B
4 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 10
GHP
B
5 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 11
OMY
B
6 14(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
lig 12
3FG
B
7 13(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC AC
lig 13
BGC
C
1 11BETA-D-GLUCOPYRANOSE
lig 14
RER
C
2 10VANCOSAMINE
lig 15
BGC
D
1 11BETA-D-GLUCOPYRANOSE
lig 16
RER
D
2 10VANCOSAMINE
lig 17
CL
A
12 1CHLORIDE ION
lig 18
CL
A
13 1CHLORIDE ION
lig 19
AAC
B
11 8ACETYLAMINO-ACETIC ACID
lig 20
CL
B
12 1CHLORIDE ION