Analysis of Ligand-Protein Contacts in PDB entry:
1RD1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 26 ligands in PDB entry 1RD1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MG
A
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
H2U
A
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 3
H2U
A
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 4
M2G
A
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 5
OMC
A
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
YG
A
37 39WYBUTOSINE
lig 7
PSU
A
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 8
5MC
A
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 9
7MG
A
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 10
5MC
A
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 11
5MU
A
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 12
PSU
A
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 13
1MA
A
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 14
2MG
B
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 15
H2U
B
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 16
H2U
B
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 17
M2G
B
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 18
OMC
B
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 19
YG
B
37 39WYBUTOSINE
lig 20
PSU
B
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 21
5MC
B
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 22
7MG
B
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 23
5MC
B
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 24
5MU
B
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 25
PSU
B
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 26
1MA
B
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE