Analysis of Ligand-Protein Contacts in PDB entry:
1YA8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 1YA8. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
1179 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
SIA
A
1182 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 3
SO4
A
3185 5SULFATE ION
lig 4
SO4
A
3285 5SULFATE ION
lig 5
MVB
A
2011 22 YL]ETHYL]-1-NAPHTHALENOL
lig 6
SMB
A
4001 72-METHYLBUTANOIC ACID
lig 7
NAG
B
1279 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
SIA
B
1282 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 9
SO4
B
3284 5SULFATE ION
lig 10
SO4
B
3384 5SULFATE ION
lig 11
SMB
B
4002 72-METHYLBUTANOIC ACID
lig 12
SMB
B
4004 72-METHYLBUTANOIC ACID
lig 13
NAG
C
1379 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
SIA
C
1382 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 15
SO4
C
3184 5SULFATE ION
lig 16
SO4
C
3385 5SULFATE ION
lig 17
MVB
C
2031 22 YL]ETHYL]-1-NAPHTHALENOL
lig 18
SMB
C
4003 72-METHYLBUTANOIC ACID