Analysis of Ligand-Protein Contacts in PDB entry:
1YAJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 72 ligands in PDB entry 1YAJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
1179 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
SIA
A
1180 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 3
SIA
A
1181 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 4
SO4
A
1184 5SULFATE ION
lig 5
SO4
A
1384 5SULFATE ION
lig 6
BEZ
A
11 9BENZOIC ACID
lig 7
BEZ
A
1385 9BENZOIC ACID
lig 8
NAG
B
1279 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
SIA
B
1280 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 10
SO4
B
1284 5SULFATE ION
lig 11
SO4
B
1385 5SULFATE ION
lig 12
BEZ
B
1386 9BENZOIC ACID
lig 13
BEZ
B
12 9BENZOIC ACID
lig 14
NAG
C
1379 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
SO4
C
1185 5SULFATE ION
lig 16
SO4
C
1285 5SULFATE ION
lig 17
BEZ
C
5013 8BENZOIC ACID
lig 18
BEZ
C
5014 9BENZOIC ACID
lig 19
NAG
D
2179 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
SIA
D
2180 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 21
SO4
D
2184 5SULFATE ION
lig 22
SO4
D
2384 5SULFATE ION
lig 23
BEZ
D
2385 9BENZOIC ACID
lig 24
BEZ
D
2386 9BENZOIC ACID
lig 25
NAG
E
2279 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
SIA
E
582 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 27
SO4
E
2284 5SULFATE ION
lig 28
SO4
E
2385 5SULFATE ION
lig 29
BEZ
E
2386 9BENZOIC ACID
lig 30
BEZ
E
2387 9BENZOIC ACID
lig 31
NAG
F
2379 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
SIA
F
682 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 33
SO4
F
2185 5SULFATE ION
lig 34
SO4
F
2285 5SULFATE ION
lig 35
BEZ
F
5023 8BENZOIC ACID
lig 36
BEZ
F
5024 9BENZOIC ACID
lig 37
NAG
G
3179 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
SIA
G
782 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 39
SO4
G
3184 5SULFATE ION
lig 40
SO4
G
3384 5SULFATE ION
lig 41
BEZ
G
3385 9BENZOIC ACID
lig 42
BEZ
G
3386 9BENZOIC ACID
lig 43
NAG
H
3279 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
SIA
H
882 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 45
SO4
H
3284 5SULFATE ION
lig 46
SO4
H
3385 5SULFATE ION
lig 47
BEZ
H
3386 9BENZOIC ACID
lig 48
BEZ
H
3387 9BENZOIC ACID
lig 49
NAG
I
3379 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
SIA
I
982 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 51
SO4
I
3185 5SULFATE ION
lig 52
SO4
I
3285 5SULFATE ION
lig 53
BEZ
I
3380 9BENZOIC ACID
lig 54
BEZ
I
3381 9BENZOIC ACID
lig 55
NAG
J
4179 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
SIA
J
1082 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 57
SO4
J
4184 5SULFATE ION
lig 58
SO4
J
4185 5SULFATE ION
lig 59
SO4
J
4384 5SULFATE ION
lig 60
BEZ
J
5041 8BENZOIC ACID
lig 61
BEZ
J
5042 9BENZOIC ACID
lig 62
NAG
K
4279 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
SIA
K
1182 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 64
SO4
K
4284 5SULFATE ION
lig 65
SO4
K
4385 5SULFATE ION
lig 66
BEZ
K
4386 9BENZOIC ACID
lig 67
BEZ
K
4387 9BENZOIC ACID
lig 68
NAG
L
4379 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 69
SIA
L
1282 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 70
SO4
L
4285 5SULFATE ION
lig 71
BEZ
L
4380 9BENZOIC ACID
lig 72
BEZ
L
4381 9BENZOIC ACID