Analysis of Ligand-Protein Contacts in PDB entry:
1GPA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 16 ligands in PDB entry 1GPA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
14 10PHOSPHOSERINE
lig 2
SEP
B
14 10PHOSPHOSERINE
lig 3
SEP
C
14 10PHOSPHOSERINE
lig 4
SEP
D
14 10PHOSPHOSERINE
lig 5
SO4
A
901 5SULFATE ION
lig 6
SO4
A
902 5SULFATE ION
lig 7
PLP
A
999 15PYRIDOXAL-5'-PHOSPHATE
lig 8
SO4
B
901 5SULFATE ION
lig 9
SO4
B
902 5SULFATE ION
lig 10
PLP
B
999 15PYRIDOXAL-5'-PHOSPHATE
lig 11
SO4
C
901 5SULFATE ION
lig 12
SO4
C
902 5SULFATE ION
lig 13
PLP
C
999 15PYRIDOXAL-5'-PHOSPHATE
lig 14
SO4
D
901 5SULFATE ION
lig 15
SO4
D
902 5SULFATE ION
lig 16
PLP
D
999 15PYRIDOXAL-5'-PHOSPHATE