Analysis of Ligand-Protein Contacts in PDB entry:
1JDB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 107 ligands in PDB entry 1JDB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MN
B
1073 1MANGANESE (II) ION
lig 2
MN
B
1074 1MANGANESE (II) ION
lig 3
K
B
1075 1POTASSIUM ION
lig 4
K
B
1076 1POTASSIUM ION
lig 5
K
B
1077 1POTASSIUM ION
lig 6
PO4
B
1078 5PHOSPHATE ION
lig 7
MN
B
1079 1MANGANESE (II) ION
lig 8
MN
B
1080 1MANGANESE (II) ION
lig 9
K
B
1081 1POTASSIUM ION
lig 10
PO4
B
1082 5PHOSPHATE ION
lig 11
K
B
1083 1POTASSIUM ION
lig 12
K
B
1084 1POTASSIUM ION
lig 13
CL
B
1085 1CHLORIDE ION
lig 14
CL
B
1086 1CHLORIDE ION
lig 15
CL
B
1087 1CHLORIDE ION
lig 16
CL
B
1088 1CHLORIDE ION
lig 17
CL
B
1089 1CHLORIDE ION
lig 18
CL
B
1090 1CHLORIDE ION
lig 19
GLN
B
1091 10GLUTAMINE
lig 20
GLN
B
1092 10GLUTAMINE
lig 21
ADP
B
1093 27ADENOSINE-5'-DIPHOSPHATE
lig 22
ADP
B
1094 27ADENOSINE-5'-DIPHOSPHATE
lig 23
ORN
B
1095 9L-ORNITHINE
lig 24
NET
B
1096 9TETRAETHYLAMMONIUM ION
lig 25
K
C
383 1POTASSIUM ION
lig 26
CL
C
384 1CHLORIDE ION
lig 27
MN
E
1073 1MANGANESE (II) ION
lig 28
MN
E
1074 1MANGANESE (II) ION
lig 29
K
E
1075 1POTASSIUM ION
lig 30
K
E
1076 1POTASSIUM ION
lig 31
K
E
1077 1POTASSIUM ION
lig 32
PO4
E
1078 5PHOSPHATE ION
lig 33
MN
E
1079 1MANGANESE (II) ION
lig 34
MN
E
1080 1MANGANESE (II) ION
lig 35
K
E
1081 1POTASSIUM ION
lig 36
PO4
E
1082 5PHOSPHATE ION
lig 37
K
E
1083 1POTASSIUM ION
lig 38
K
E
1084 1POTASSIUM ION
lig 39
K
E
1085 1POTASSIUM ION
lig 40
CL
E
1086 1CHLORIDE ION
lig 41
CL
E
1087 1CHLORIDE ION
lig 42
CL
E
1088 1CHLORIDE ION
lig 43
CL
E
1089 1CHLORIDE ION
lig 44
CL
E
1090 1CHLORIDE ION
lig 45
CL
E
1091 1CHLORIDE ION
lig 46
CL
E
1092 1CHLORIDE ION
lig 47
GLN
E
1093 10GLUTAMINE
lig 48
GLN
E
1094 10GLUTAMINE
lig 49
ADP
E
1095 27ADENOSINE-5'-DIPHOSPHATE
lig 50
ADP
E
1096 27ADENOSINE-5'-DIPHOSPHATE
lig 51
ORN
E
1097 9L-ORNITHINE
lig 52
NET
E
1098 9TETRAETHYLAMMONIUM ION
lig 53
K
F
383 1POTASSIUM ION
lig 54
CL
F
384 1CHLORIDE ION
lig 55
MN
H
1073 1MANGANESE (II) ION
lig 56
MN
H
1074 1MANGANESE (II) ION
lig 57
K
H
1075 1POTASSIUM ION
lig 58
K
H
1076 1POTASSIUM ION
lig 59
K
H
1077 1POTASSIUM ION
lig 60
PO4
H
1078 5PHOSPHATE ION
lig 61
MN
H
1079 1MANGANESE (II) ION
lig 62
MN
H
1080 1MANGANESE (II) ION
lig 63
K
H
1081 1POTASSIUM ION
lig 64
PO4
H
1082 5PHOSPHATE ION
lig 65
K
H
1083 1POTASSIUM ION
lig 66
CL
H
1084 1CHLORIDE ION
lig 67
CL
H
1085 1CHLORIDE ION
lig 68
CL
H
1086 1CHLORIDE ION
lig 69
CL
H
1087 1CHLORIDE ION
lig 70
CL
H
1088 1CHLORIDE ION
lig 71
CL
H
1089 1CHLORIDE ION
lig 72
GLN
H
1090 10GLUTAMINE
lig 73
GLN
H
1091 10GLUTAMINE
lig 74
ADP
H
1092 27ADENOSINE-5'-DIPHOSPHATE
lig 75
ADP
H
1093 27ADENOSINE-5'-DIPHOSPHATE
lig 76
ORN
H
1094 9L-ORNITHINE
lig 77
NET
H
1095 9TETRAETHYLAMMONIUM ION
lig 78
K
I
383 1POTASSIUM ION
lig 79
CL
I
384 1CHLORIDE ION
lig 80
MN
K
1073 1MANGANESE (II) ION
lig 81
MN
K
1074 1MANGANESE (II) ION
lig 82
K
K
1075 1POTASSIUM ION
lig 83
K
K
1076 1POTASSIUM ION
lig 84
K
K
1077 1POTASSIUM ION
lig 85
PO4
K
1078 5PHOSPHATE ION
lig 86
MN
K
1079 1MANGANESE (II) ION
lig 87
MN
K
1080 1MANGANESE (II) ION
lig 88
K
K
1081 1POTASSIUM ION
lig 89
PO4
K
1082 5PHOSPHATE ION
lig 90
K
K
1083 1POTASSIUM ION
lig 91
K
K
1084 1POTASSIUM ION
lig 92
K
K
1085 1POTASSIUM ION
lig 93
CL
K
1086 1CHLORIDE ION
lig 94
CL
K
1087 1CHLORIDE ION
lig 95
CL
K
1088 1CHLORIDE ION
lig 96
CL
K
1089 1CHLORIDE ION
lig 97
CL
K
1090 1CHLORIDE ION
lig 98
CL
K
1091 1CHLORIDE ION
lig 99
PO4
K
1092 5PHOSPHATE ION
lig 100
GLN
K
1093 10GLUTAMINE
lig 101
GLN
K
1094 10GLUTAMINE
lig 102
ADP
K
1095 27ADENOSINE-5'-DIPHOSPHATE
lig 103
ADP
K
1096 27ADENOSINE-5'-DIPHOSPHATE
lig 104
ORN
K
1097 9L-ORNITHINE
lig 105
NET
K
1098 9TETRAETHYLAMMONIUM ION
lig 106
K
L
383 1POTASSIUM ION
lig 107
CL
L
384 1CHLORIDE ION