Analysis of Ligand-Protein Contacts in PDB entry:
1M5Q


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 60 ligands in PDB entry 1M5Q. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
CD
A
2001 1CADMIUM ION
lig 2
CD
A
2007 1CADMIUM ION
lig 3
NA
A
3004 1SODIUM ION
lig 4
GOL
A
4012 6GLYCEROL
lig 5
CD
B
2002 1CADMIUM ION
lig 6
NA
B
3001 1SODIUM ION
lig 7
CD
D
2003 1CADMIUM ION
lig 8
CD
D
2004 1CADMIUM ION
lig 9
CD
E
2005 1CADMIUM ION
lig 10
CD
F
2006 1CADMIUM ION
lig 11
ACY
F
5015 4ACETIC ACID
lig 12
GOL
G
4001 6GLYCEROL
lig 13
CD
H
2008 1CADMIUM ION
lig 14
CD
H
2014 1CADMIUM ION
lig 15
GOL
H
4002 6GLYCEROL
lig 16
GOL
H
4011 6GLYCEROL
lig 17
ACY
H
5012 4ACETIC ACID
lig 18
CD
I
2009 1CADMIUM ION
lig 19
ACY
I
5004 4ACETIC ACID
lig 20
ACY
I
5010 4ACETIC ACID
lig 21
CD
J
2010 1CADMIUM ION
lig 22
GOL
J
4005 6GLYCEROL
lig 23
CD
K
2011 1CADMIUM ION
lig 24
ACY
K
5013 4ACETIC ACID
lig 25
CD
L
2012 1CADMIUM ION
lig 26
CD
M
2013 1CADMIUM ION
lig 27
GOL
M
4003 6GLYCEROL
lig 28
ACY
M
5003 4ACETIC ACID
lig 29
ACY
N
5009 4ACETIC ACID
lig 30
CD
O
2021 1CADMIUM ION
lig 31
CD
P
2015 1CADMIUM ION
lig 32
CD
P
2016 1CADMIUM ION
lig 33
CD
Q
2017 1CADMIUM ION
lig 34
CD
R
2018 1CADMIUM ION
lig 35
NA
R
3005 1SODIUM ION
lig 36
GOL
R
4007 6GLYCEROL
lig 37
CD
S
2019 1CADMIUM ION
lig 38
NA
S
3002 1SODIUM ION
lig 39
CD
U
2020 1CADMIUM ION
lig 40
CD
V
2022 1CADMIUM ION
lig 41
NA
V
3003 1SODIUM ION
lig 42
GOL
V
4008 6GLYCEROL
lig 43
ACY
V
5007 4ACETIC ACID
lig 44
CD
W
2023 1CADMIUM ION
lig 45
GOL
W
4006 6GLYCEROL
lig 46
ACY
W
5001 4ACETIC ACID
lig 47
ACY
W
5011 4ACETIC ACID
lig 48
CD
X
2024 1CADMIUM ION
lig 49
GOL
X
4004 6GLYCEROL
lig 50
ACY
X
5002 4ACETIC ACID
lig 51
CD
Y
2025 1CADMIUM ION
lig 52
ACY
Y
5008 4ACETIC ACID
lig 53
CD
Z
2026 1CADMIUM ION
lig 54
ACY
Z
5006 4ACETIC ACID
lig 55
CD
1
2027 1CADMIUM ION
lig 56
GOL
1
4010 6GLYCEROL
lig 57
ACY
1
5014 4ACETIC ACID
lig 58
CD
2
2028 1CADMIUM ION
lig 59
GOL
2
4009 6GLYCEROL
lig 60
ACY
2
5005 4ACETIC ACID