Analysis of Ligand-Protein Contacts in PDB entry:
1MKD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 1MKD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ZN
A
2001 1ZINC ION
lig 2
MG
A
2002 1MAGNESIUM ION
lig 3
ZAR
A
3001 19 ONE
lig 4
ZN
B
2003 1ZINC ION
lig 5
MG
B
2004 1MAGNESIUM ION
lig 6
ZAR
B
3002 19 ONE
lig 7
ZN
C
2005 1ZINC ION
lig 8
MG
C
2006 1MAGNESIUM ION
lig 9
ZAR
C
3003 19 ONE
lig 10
ZN
D
2007 1ZINC ION
lig 11
MG
D
2008 1MAGNESIUM ION
lig 12
ZAR
D
3004 19 ONE
lig 13
ZN
E
2009 1ZINC ION
lig 14
MG
E
2010 1MAGNESIUM ION
lig 15
ZAR
E
3005 19 ONE
lig 16
ZN
F
2011 1ZINC ION
lig 17
MG
F
2012 1MAGNESIUM ION
lig 18
ZAR
F
3006 19 ONE
lig 19
ZN
G
2013 1ZINC ION
lig 20
MG
G
2014 1MAGNESIUM ION
lig 21
ZAR
G
3007 19 ONE
lig 22
ZN
H
2015 1ZINC ION
lig 23
MG
H
2016 1MAGNESIUM ION
lig 24
ZAR
H
3008 19 ONE
lig 25
ZN
I
2017 1ZINC ION
lig 26
MG
I
2018 1MAGNESIUM ION
lig 27
ZAR
I
3009 19 ONE
lig 28
ZN
J
2019 1ZINC ION
lig 29
MG
J
2020 1MAGNESIUM ION
lig 30
ZAR
J
3010 19 ONE
lig 31
ZN
K
2021 1ZINC ION
lig 32
MG
K
2022 1MAGNESIUM ION
lig 33
ZAR
K
3011 19 ONE
lig 34
ZN
L
2023 1ZINC ION
lig 35
MG
L
2024 1MAGNESIUM ION
lig 36
ZAR
L
3012 19 ONE