Analysis of Ligand-Protein Contacts in PDB entry:
1MQM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 1MQM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 6
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
J
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
GAL
J
2 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
J
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 15
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 16
NAG
L
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
GAL
L
2 11BETA-D-GALACTOPYRANOSE
lig 18
SIA
L
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 19
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 22
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 23
GAL
N
1 12BETA-D-GALACTOPYRANOSE
lig 24
SIA
N
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 25
NAG
A
400 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
B
400 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
D
400 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
D
401 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
E
400 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
G
400 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
G
401 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
G
406 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
H
400 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE