Analysis of Ligand-Protein Contacts in PDB entry:
1OB5


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 54 ligands in PDB entry 1OB5. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MG
B
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
H2U
B
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 3
H2U
B
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 4
M2G
B
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 5
OMC
B
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
OMG
B
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
YG
B
37 39WYBUTOSINE
lig 8
PSU
B
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 9
5MC
B
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 10
7MG
B
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 11
5MC
B
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 12
5MU
B
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 13
PSU
B
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 14
1MA
B
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 15
PHA
B
77 11PHENYLALANINAL
lig 16
2MG
D
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 17
H2U
D
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 18
H2U
D
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 19
M2G
D
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 20
OMC
D
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 21
OMG
D
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 22
YG
D
37 39WYBUTOSINE
lig 23
PSU
D
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 24
5MC
D
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 25
7MG
D
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 26
5MC
D
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 27
5MU
D
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 28
PSU
D
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 29
1MA
D
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 30
PHA
D
77 11PHENYLALANINAL
lig 31
2MG
F
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 32
H2U
F
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 33
H2U
F
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 34
M2G
F
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 35
OMC
F
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 36
OMG
F
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 37
YG
F
37 39WYBUTOSINE
lig 38
PSU
F
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 39
5MC
F
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 40
7MG
F
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 41
5MC
F
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 42
5MU
F
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 43
PSU
F
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 44
1MA
F
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 45
PHA
F
77 11PHENYLALANINAL
lig 46
GNP
A
1406 32PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTE
lig 47
MG
A
1407 1MAGNESIUM ION
lig 48
ENX
A
1408 47ENACYLOXIN IIA
lig 49
GNP
C
1406 32PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTE
lig 50
MG
C
1407 1MAGNESIUM ION
lig 51
ENX
C
1408 47ENACYLOXIN IIA
lig 52
GNP
E
1406 32PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTE
lig 53
MG
E
1407 1MAGNESIUM ION
lig 54
ENX
E
1408 47ENACYLOXIN IIA