Analysis of Ligand-Protein Contacts in PDB entry:
1PPG


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 1PPG. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HMB
I
1 8(4S)-4-HYDROXY-4-METHOXYBUTANOIC ACID
lig 2
VAI
I
5 7(2S)-2-AMINO-3-METHYLBUTANE-1,1-DIOL
lig 3
0QE
I
6 1CHLOROMETHANE
lig 4
NAG
A
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
A
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
A
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
A
4 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
A
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
GAL
A
6 11BETA-D-GALACTOPYRANOSE
lig 10
MAN
A
7 11ALPHA-D-MANNOPYRANOSE
lig 11
FUC
A
8 10ALPHA-L-FUCOPYRANOSE
lig 12
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 15
BMA
B
4 11BETA-D-MANNOPYRANOSE
lig 16
NDG
B
5 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 17
GLC
B
6 11ALPHA-D-GLUCOPYRANOSE
lig 18
MAN
B
7 11ALPHA-D-MANNOPYRANOSE
lig 19
FUC
B
8 10ALPHA-L-FUCOPYRANOSE