Analysis of Ligand-Protein Contacts in PDB entry:
1QDO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 16 ligands in PDB entry 1QDO. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MMA
E
1 13METHYL ALPHA-D-MANNOPYRANOSIDE
lig 2
MAN
E
2 11ALPHA-D-MANNOPYRANOSE
lig 3
MMA
F
1 13METHYL ALPHA-D-MANNOPYRANOSIDE
lig 4
MAN
F
2 11ALPHA-D-MANNOPYRANOSE
lig 5
MMA
G
1 13METHYL ALPHA-D-MANNOPYRANOSIDE
lig 6
MAN
G
2 11ALPHA-D-MANNOPYRANOSE
lig 7
MMA
H
1 13METHYL ALPHA-D-MANNOPYRANOSIDE
lig 8
MAN
H
2 11ALPHA-D-MANNOPYRANOSE
lig 9
MN
A
240 1MANGANESE (II) ION
lig 10
CA
A
241 1CALCIUM ION
lig 11
MN
B
242 1MANGANESE (II) ION
lig 12
CA
B
243 1CALCIUM ION
lig 13
MN
C
244 1MANGANESE (II) ION
lig 14
CA
C
245 1CALCIUM ION
lig 15
MN
D
246 1MANGANESE (II) ION
lig 16
CA
D
247 1CALCIUM ION