Analysis of Ligand-Protein Contacts in PDB entry:
1RD3


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 17 ligands in PDB entry 1RD3. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NDG
E
2 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 3
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 5
FUC
E
5 10ALPHA-L-FUCOPYRANOSE
lig 6
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NDG
F
2 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 8
FUC
F
3 10ALPHA-L-FUCOPYRANOSE
lig 9
PO4
B
248 5PHOSPHATE ION
lig 10
PO4
B
249 5PHOSPHATE ION
lig 11
GOL
B
250 6GLYCEROL
lig 12
GOL
B
251 6GLYCEROL
lig 13
GOL
B
252 6GLYCEROL
lig 14
GOL
B
253 6GLYCEROL
lig 15
GOL
B
254 6GLYCEROL
lig 16
PO4
D
248 5PHOSPHATE ION
lig 17
GOL
D
249 6GLYCEROL