Analysis of Ligand-Protein Contacts in PDB entry:
1UBM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 10 ligands in PDB entry 1UBM. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
SF4
S
1001 8IRON/SULFUR CLUSTER
lig 2
SF4
S
1002 8IRON/SULFUR CLUSTER
lig 3
F3S
S
1003 7FE3-S4 CLUSTER
lig 4
MPD
S
2001 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 5
MPD
S
2004 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 6
MPD
S
2007 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 7
MG
L
1005 1MAGNESIUM ION
lig 8
FNE
L
1004 8 S)NICKEL(II)](FE-NI)
lig 9
MPD
L
2006 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 10
MPD
L
2010 8(4S)-2-METHYL-2,4-PENTANEDIOL