Analysis of Ligand-Protein Contacts in PDB entry:
1V54


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 60 ligands in PDB entry 1V54. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
SAC
I
1 9N-ACETYL-SERINE
lig 5
FME
N
1 10N-FORMYLMETHIONINE
lig 6
FME
O
1 10N-FORMYLMETHIONINE
lig 7
TPO
T
11 11PHOSPHOTHREONINE
lig 8
SAC
V
1 9N-ACETYL-SERINE
lig 9
CU
A
517 1COPPER (II) ION
lig 10
MG
A
3518 1MAGNESIUM ION
lig 11
NA
A
3519 1SODIUM ION
lig 12
HEA
A
515 60HEME-A
lig 13
HEA
A
516 60HEME-A
lig 14
TGL
A
3521 63TRISTEAROYLGLYCEROL
lig 15
PGV
A
3266 51 OCTADEC-11-ENOATE
lig 16
PGV
A
3524 51 OCTADEC-11-ENOATE
lig 17
CUA
B
228 2DINUCLEAR COPPER ION
lig 18
CHD
B
4085 29CHOLIC ACID
lig 19
CHD
C
3525 29CHOLIC ACID
lig 20
CHD
C
3271 29CHOLIC ACID
lig 21
CDL
C
3270 100CARDIOLIPIN
lig 22
PEK
C
3264 53 11,14-TETRAENOATE
lig 23
PEK
C
3265 53 11,14-TETRAENOATE
lig 24
PGV
C
3267 51 OCTADEC-11-ENOATE
lig 25
PGV
C
3268 51 OCTADEC-11-ENOATE
lig 26
UNX
C
3262 1UNKNOWN ATOM OR ION
lig 27
TGL
D
3523 63TRISTEAROYLGLYCEROL
lig 28
PSC
E
3230 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 29
ZN
F
99 1ZINC ION
lig 30
CDL
G
3269 100CARDIOLIPIN
lig 31
PEK
G
4263 53 11,14-TETRAENOATE
lig 32
CHD
J
3060 29CHOLIC ACID
lig 33
TGL
L
3522 63TRISTEAROYLGLYCEROL
lig 34
DMU
M
3526 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 35
CU
N
517 1COPPER (II) ION
lig 36
MG
N
4518 1MAGNESIUM ION
lig 37
NA
N
4519 1SODIUM ION
lig 38
HEA
N
515 60HEME-A
lig 39
HEA
N
516 60HEME-A
lig 40
TGL
N
4521 63TRISTEAROYLGLYCEROL
lig 41
TGL
N
4522 63TRISTEAROYLGLYCEROL
lig 42
PGV
N
4266 51 OCTADEC-11-ENOATE
lig 43
PGV
N
4524 51 OCTADEC-11-ENOATE
lig 44
CHD
O
3085 29CHOLIC ACID
lig 45
PSC
O
4230 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 46
CUA
O
228 2DINUCLEAR COPPER ION
lig 47
CHD
P
4525 29CHOLIC ACID
lig 48
CHD
P
4271 29CHOLIC ACID
lig 49
CDL
P
4270 100CARDIOLIPIN
lig 50
PEK
P
4264 53 11,14-TETRAENOATE
lig 51
PEK
P
4265 53 11,14-TETRAENOATE
lig 52
PGV
P
4267 51 OCTADEC-11-ENOATE
lig 53
PGV
P
4268 51 OCTADEC-11-ENOATE
lig 54
UNX
P
4262 1UNKNOWN ATOM OR ION
lig 55
TGL
Q
4523 63TRISTEAROYLGLYCEROL
lig 56
ZN
S
99 1ZINC ION
lig 57
PEK
T
3263 53 11,14-TETRAENOATE
lig 58
CDL
T
4269 100CARDIOLIPIN
lig 59
CHD
W
4060 29CHOLIC ACID
lig 60
DMU
Z
4526 33DECYL-BETA-D-MALTOPYRANOSIDE