Analysis of Ligand-Protein Contacts in PDB entry:
1VDV


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 37 ligands in PDB entry 1VDV. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CA
A
5301 1CALCIUM ION
lig 2
CA
A
5304 1CALCIUM ION
lig 3
FES
A
3001 4FE2/S2 (INORGANIC) CLUSTER
lig 4
FES
A
3002 4FE2/S2 (INORGANIC) CLUSTER
lig 5
FAD
A
3005 53FLAVIN-ADENINE DINUCLEOTIDE
lig 6
YSH
A
5101 22 CARBOXYLIC ACID
lig 7
GOL
A
5001 6GLYCEROL
lig 8
GOL
A
5002 6GLYCEROL
lig 9
GOL
A
5003 6GLYCEROL
lig 10
GOL
A
5004 6GLYCEROL
lig 11
GOL
A
5005 6GLYCEROL
lig 12
GOL
A
5006 6GLYCEROL
lig 13
GOL
A
5011 6GLYCEROL
lig 14
GOL
A
5016 6GLYCEROL
lig 15
GOL
A
5017 6GLYCEROL
lig 16
GOL
A
5018 6GLYCEROL
lig 17
GOL
A
5019 6GLYCEROL
lig 18
ACY
A
5201 4ACETIC ACID
lig 19
ZXF
A
5305 28MOLYBDOPTERIN HYDOXY-OXO-THIOL-MOLYBDENUM
lig 20
CA
B
5302 1CALCIUM ION
lig 21
CA
B
5303 1CALCIUM ION
lig 22
FES
B
4001 4FE2/S2 (INORGANIC) CLUSTER
lig 23
FES
B
4002 4FE2/S2 (INORGANIC) CLUSTER
lig 24
FAD
B
4005 53FLAVIN-ADENINE DINUCLEOTIDE
lig 25
YSH
B
5102 22 CARBOXYLIC ACID
lig 26
GOL
B
5007 6GLYCEROL
lig 27
GOL
B
5008 6GLYCEROL
lig 28
GOL
B
5009 6GLYCEROL
lig 29
GOL
B
5012 6GLYCEROL
lig 30
GOL
B
5013 6GLYCEROL
lig 31
GOL
B
5014 6GLYCEROL
lig 32
GOL
B
5015 6GLYCEROL
lig 33
GOL
B
5020 6GLYCEROL
lig 34
GOL
B
5021 6GLYCEROL
lig 35
GOL
B
5022 6GLYCEROL
lig 36
ACY
B
5202 4ACETIC ACID
lig 37
ZXF
B
5304 28MOLYBDOPTERIN HYDOXY-OXO-THIOL-MOLYBDENUM