Analysis of Ligand-Protein Contacts in PDB entry:
1VKM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 1VKM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MN
A
300 1MANGANESE (II) ION
lig 2
MN
A
400 1MANGANESE (II) ION
lig 3
MN
A
401 1MANGANESE (II) ION
lig 4
UNL
A
600 13UNKNOWN LIGAND
lig 5
EDO
A
601 41,2-ETHANEDIOL
lig 6
MN
B
300 1MANGANESE (II) ION
lig 7
MN
B
400 1MANGANESE (II) ION
lig 8
UNL
B
600 13UNKNOWN LIGAND
lig 9
EDO
B
601 41,2-ETHANEDIOL
lig 10
EDO
B
602 41,2-ETHANEDIOL
lig 11
EDO
B
603 41,2-ETHANEDIOL
lig 12
MN
C
300 1MANGANESE (II) ION
lig 13
MN
C
400 1MANGANESE (II) ION
lig 14
MN
C
401 1MANGANESE (II) ION
lig 15
UNL
C
600 13UNKNOWN LIGAND
lig 16
EDO
C
601 41,2-ETHANEDIOL
lig 17
EDO
C
602 41,2-ETHANEDIOL
lig 18
MN
D
300 1MANGANESE (II) ION
lig 19
MN
D
400 1MANGANESE (II) ION
lig 20
UNL
D
600 13UNKNOWN LIGAND
lig 21
EDO
D
601 41,2-ETHANEDIOL
lig 22
EDO
D
602 41,2-ETHANEDIOL
lig 23
MN
E
300 1MANGANESE (II) ION
lig 24
MN
E
400 1MANGANESE (II) ION
lig 25
MN
E
401 1MANGANESE (II) ION
lig 26
UNL
E
600 13UNKNOWN LIGAND
lig 27
EDO
E
601 41,2-ETHANEDIOL
lig 28
EDO
E
602 41,2-ETHANEDIOL
lig 29
EDO
E
603 41,2-ETHANEDIOL
lig 30
MN
F
300 1MANGANESE (II) ION
lig 31
MN
F
400 1MANGANESE (II) ION
lig 32
MN
F
401 1MANGANESE (II) ION
lig 33
UNL
F
600 13UNKNOWN LIGAND