Analysis of Ligand-Protein Contacts in PDB entry:
1VPS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 1VPS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
F
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
GAL
F
2 11BETA-D-GALACTOPYRANOSE
lig 3
SIA
F
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 4
SIA
F
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 5
NAG
G
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
GAL
G
2 11BETA-D-GALACTOPYRANOSE
lig 7
SIA
G
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 8
SIA
G
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 9
NAG
H
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
GAL
H
2 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
H
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
SIA
H
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 13
NAG
I
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
GAL
I
2 11BETA-D-GALACTOPYRANOSE
lig 15
SIA
I
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 16
SIA
I
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 17
NAG
J
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
GAL
J
2 11BETA-D-GALACTOPYRANOSE
lig 19
SIA
J
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 20
SIA
J
4 20N-ACETYL-ALPHA-NEURAMINIC ACID