Analysis of Ligand-Protein Contacts in PDB entry:
1W3M


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 111 ligands in PDB entry 1W3M. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
VLL
A
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 2
CPI
A
3 86-CARBOXYPIPERIDINE
lig 3
2AS
A
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 4
VDL
A
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 5
VLL
B
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 6
CPI
B
3 86-CARBOXYPIPERIDINE
lig 7
2AS
B
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 8
VDL
B
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 9
VLL
C
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 10
CPI
C
3 86-CARBOXYPIPERIDINE
lig 11
2AS
C
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 12
VDL
C
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 13
VLL
D
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 14
CPI
D
3 86-CARBOXYPIPERIDINE
lig 15
2AS
D
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 16
VDL
D
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 17
VLL
E
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 18
CPI
E
3 86-CARBOXYPIPERIDINE
lig 19
2AS
E
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 20
VDL
E
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 21
VLL
F
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 22
CPI
F
3 86-CARBOXYPIPERIDINE
lig 23
2AS
F
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 24
VDL
F
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 25
VLL
G
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 26
CPI
G
3 86-CARBOXYPIPERIDINE
lig 27
2AS
G
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 28
VDL
G
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 29
VLL
H
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 30
CPI
H
3 86-CARBOXYPIPERIDINE
lig 31
2AS
H
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 32
VDL
H
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 33
VLL
I
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 34
CPI
I
3 86-CARBOXYPIPERIDINE
lig 35
2AS
I
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 36
VDL
I
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 37
VLL
J
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 38
CPI
J
3 86-CARBOXYPIPERIDINE
lig 39
2AS
J
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 40
VDL
J
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 41
VLL
K
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 42
CPI
K
3 86-CARBOXYPIPERIDINE
lig 43
2AS
K
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 44
VDL
K
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 45
VLL
L
2 7(2S)-2,3-DIAMINOBUTANOIC ACID
lig 46
CPI
L
3 86-CARBOXYPIPERIDINE
lig 47
2AS
L
4 9(2S,3S)-3-METHYL-ASPARTIC ACID
lig 48
VDL
L
9 7(2R,3R)-2,3-DIAMINOBUTANOIC ACID
lig 49
LNG
A
0 4DELTA-3ISOTETRADECENOIC ACID
lig 50
CA
A
3013 1CALCIUM ION
lig 51
CL
A
3014 1CHLORIDE ION
lig 52
CL
A
3015 1CHLORIDE ION
lig 53
LNG
B
0 9DELTA-3ISOTETRADECENOIC ACID
lig 54
EOH
B
3013 3ETHANOL
lig 55
EOH
B
3014 3ETHANOL
lig 56
CA
B
3015 1CALCIUM ION
lig 57
CA
B
3016 1CALCIUM ION
lig 58
CA
B
3017 1CALCIUM ION
lig 59
CL
B
3018 1CHLORIDE ION
lig 60
EOH
B
3019 3ETHANOL
lig 61
EOH
B
3020 3ETHANOL
lig 62
EOH
B
3021 3ETHANOL
lig 63
LNG
C
0 4DELTA-3ISOTETRADECENOIC ACID
lig 64
EOH
C
3013 3ETHANOL
lig 65
CA
C
3014 1CALCIUM ION
lig 66
CA
C
3015 1CALCIUM ION
lig 67
CA
C
3016 1CALCIUM ION
lig 68
CL
C
3017 1CHLORIDE ION
lig 69
CL
C
3018 1CHLORIDE ION
lig 70
LNG
D
0 4DELTA-3ISOTETRADECENOIC ACID
lig 71
CA
D
3013 1CALCIUM ION
lig 72
CA
D
3014 1CALCIUM ION
lig 73
CL
D
3015 1CHLORIDE ION
lig 74
LNG
E
0 5DELTA-3ISOTETRADECENOIC ACID
lig 75
CA
E
3013 1CALCIUM ION
lig 76
CA
E
3014 1CALCIUM ION
lig 77
EOH
E
3015 3ETHANOL
lig 78
LNG
F
0 5DELTA-3ISOTETRADECENOIC ACID
lig 79
CA
F
3013 1CALCIUM ION
lig 80
CA
F
3014 1CALCIUM ION
lig 81
CL
F
3015 1CHLORIDE ION
lig 82
LNG
G
0 15DELTA-3ISOTETRADECENOIC ACID
lig 83
EOH
G
3013 3ETHANOL
lig 84
EOH
G
3014 3ETHANOL
lig 85
CA
G
3015 1CALCIUM ION
lig 86
CA
G
3016 1CALCIUM ION
lig 87
CA
G
3017 1CALCIUM ION
lig 88
LNG
H
0 3DELTA-3ISOTETRADECENOIC ACID
lig 89
EOH
H
3013 3ETHANOL
lig 90
EOH
H
3014 3ETHANOL
lig 91
EOH
H
3015 3ETHANOL
lig 92
CA
H
3016 1CALCIUM ION
lig 93
CA
H
3017 1CALCIUM ION
lig 94
LNG
I
0 4DELTA-3ISOTETRADECENOIC ACID
lig 95
CA
I
3013 1CALCIUM ION
lig 96
CA
I
3014 1CALCIUM ION
lig 97
LNG
J
0 15DELTA-3ISOTETRADECENOIC ACID
lig 98
CA
J
3014 1CALCIUM ION
lig 99
CA
J
3015 1CALCIUM ION
lig 100
CL
J
3016 1CHLORIDE ION
lig 101
EOH
J
3017 3ETHANOL
lig 102
LNG
K
0 4DELTA-3ISOTETRADECENOIC ACID
lig 103
EOH
K
3013 3ETHANOL
lig 104
EOH
K
3014 3ETHANOL
lig 105
CA
K
3015 1CALCIUM ION
lig 106
CA
K
3016 1CALCIUM ION
lig 107
CL
K
3017 1CHLORIDE ION
lig 108
LNG
L
0 3DELTA-3ISOTETRADECENOIC ACID
lig 109
CA
L
3013 1CALCIUM ION
lig 110
CL
L
3014 1CHLORIDE ION
lig 111
EOH
L
3015 3ETHANOL