Analysis of Ligand-Protein Contacts in PDB entry:
1YA4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 1YA4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
1179 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
SIA
A
1180 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 3
SO4
A
1181 5SULFATE ION
lig 4
SO4
A
1182 5SULFATE ION
lig 5
CTX
A
1 28 DIMETHYLETHANAMINE
lig 6
CTX
A
11 28 DIMETHYLETHANAMINE
lig 7
NAG
B
1279 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
SIA
B
1280 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 9
SO4
B
1281 5SULFATE ION
lig 10
SO4
B
1282 5SULFATE ION
lig 11
CTX
B
2 28 DIMETHYLETHANAMINE
lig 12
CTX
B
1283 28 DIMETHYLETHANAMINE
lig 13
NAG
C
1379 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
SIA
C
1380 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 15
SO4
C
1381 5SULFATE ION
lig 16
SO4
C
1382 5SULFATE ION
lig 17
CTX
C
3 28 DIMETHYLETHANAMINE
lig 18
CTX
C
1383 28 DIMETHYLETHANAMINE