Analysis of Ligand-Protein Contacts in PDB entry:
1YLS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 27 ligands in PDB entry 1YLS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
UMS
A
106 212'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPH
lig 2
CSL
A
110 21(D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-P
lig 3
CSL
B
204 21(D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-P
lig 4
CSL
B
209 21(D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-P
lig 5
UMS
B
219 212'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPH
lig 6
UMS
B
222 212'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPH
lig 7
UMS
C
106 212'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPH
lig 8
CSL
C
110 21(D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-P
lig 9
CSL
D
204 21(D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-P
lig 10
CSL
D
209 21(D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-P
lig 11
UMS
D
219 212'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPH
lig 12
UMS
D
222 212'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPH
lig 13
DAI
A
100 28 3(2H)-DIONE
lig 14
MG
B
240 1MAGNESIUM ION
lig 15
MG
B
241 1MAGNESIUM ION
lig 16
MG
B
242 1MAGNESIUM ION
lig 17
MG
B
243 1MAGNESIUM ION
lig 18
MG
B
244 1MAGNESIUM ION
lig 19
MG
B
245 1MAGNESIUM ION
lig 20
MG
B
246 1MAGNESIUM ION
lig 21
DAI
C
100 28 3(2H)-DIONE
lig 22
MG
D
247 1MAGNESIUM ION
lig 23
MG
D
340 1MAGNESIUM ION
lig 24
MG
D
341 1MAGNESIUM ION
lig 25
MG
D
342 1MAGNESIUM ION
lig 26
MG
D
343 1MAGNESIUM ION
lig 27
MG
D
344 1MAGNESIUM ION