Analysis of Ligand-Protein Contacts in PDB entry:
25II


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 25II. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HYP
D
2 84-HYDROXYPROLINE
lig 2
HYP
D
11 84-HYDROXYPROLINE
lig 3
HYP
D
29 84-HYDROXYPROLINE
lig 4
DPN
D
44 11D-PHENYLALANINE
lig 5
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 8
MAN
B
4 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
B
5 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
B
6 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
B
7 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
B
8 11ALPHA-D-MANNOPYRANOSE
lig 13
MAN
B
9 11ALPHA-D-MANNOPYRANOSE
lig 14
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
A
2001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
A
2002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
A
2003 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
A
2004 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
9Z9
A
2005 39 (METHOXYMETHYL)BUTOXY]SPIROST-5-EN
lig 21
PCW
A
2006 481,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
Y01
A
2007 35CHOLESTEROL HEMISUCCINATE
lig 23
CLR
A
2008 28CHOLESTEROL
lig 24
PCW
A
2009 541,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 25
PCW
A
2010 411,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 26
P5S
A
2011 35 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 27
LPE
A
2012 221-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 28
Y01
A
2013 35CHOLESTEROL HEMISUCCINATE
lig 29
P3X
A
2014 45 HEXADECANOATE
lig 30
Y01
A
2015 35CHOLESTEROL HEMISUCCINATE
lig 31
PCW
A
2016 511,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32
NA
A
2017 1SODIUM ION
lig 33
NAG
C
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
C
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
C
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
PCW
D
101 451,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE