Analysis of Ligand-Protein Contacts in PDB entry:
2DB4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 50 ligands in PDB entry 2DB4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DCW
A
201 16DICYCLOHEXYLUREA
lig 2
NA
A
202 1SODIUM ION
lig 3
LHG
A
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 4
LHG
A
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 5
UMQ
A
205 12UNDECYL-MALTOSIDE
lig 6
UMQ
A
206 12UNDECYL-MALTOSIDE
lig 7
NA
B
202 1SODIUM ION
lig 8
DCW
B
201 16DICYCLOHEXYLUREA
lig 9
LHG
B
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 10
LHG
B
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 11
NA
C
202 1SODIUM ION
lig 12
LHG
C
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 13
DCW
C
201 16DICYCLOHEXYLUREA
lig 14
LHG
C
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 15
LHG
C
205 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 16
UMQ
C
206 34UNDECYL-MALTOSIDE
lig 17
NA
D
202 1SODIUM ION
lig 18
LHG
D
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 19
LHG
D
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 20
DCW
D
201 16DICYCLOHEXYLUREA
lig 21
UMQ
D
205 12UNDECYL-MALTOSIDE
lig 22
NA
E
202 1SODIUM ION
lig 23
LHG
E
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 24
UMQ
E
204 12UNDECYL-MALTOSIDE
lig 25
DCW
E
201 16DICYCLOHEXYLUREA
lig 26
NA
F
202 1SODIUM ION
lig 27
LHG
F
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 28
LHG
F
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 29
LHG
F
205 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 30
UMQ
F
206 34UNDECYL-MALTOSIDE
lig 31
DCW
F
201 16DICYCLOHEXYLUREA
lig 32
NA
G
202 1SODIUM ION
lig 33
LHG
G
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 34
LHG
G
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 35
DCW
G
201 16DICYCLOHEXYLUREA
lig 36
NA
H
202 1SODIUM ION
lig 37
LHG
H
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 38
UMQ
H
204 12UNDECYL-MALTOSIDE
lig 39
DCW
H
201 16DICYCLOHEXYLUREA
lig 40
NA
I
202 1SODIUM ION
lig 41
LHG
I
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 42
LHG
I
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 43
UMQ
I
205 12UNDECYL-MALTOSIDE
lig 44
DCW
I
201 16DICYCLOHEXYLUREA
lig 45
NA
J
202 1SODIUM ION
lig 46
LHG
J
203 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 47
LHG
J
204 401,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 48
UMQ
J
205 12UNDECYL-MALTOSIDE
lig 49
UMQ
J
206 12UNDECYL-MALTOSIDE
lig 50
DCW
J
201 16DICYCLOHEXYLUREA