Analysis of Ligand-Protein Contacts in PDB entry:
2DDB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 2DDB. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
NA
A
301 1SODIUM ION
lig 2
FMT
A
305 3FORMIC ACID
lig 3
FMT
A
306 3FORMIC ACID
lig 4
FMT
A
314 3FORMIC ACID
lig 5
FMT
A
315 3FORMIC ACID
lig 6
FMT
A
316 3FORMIC ACID
lig 7
FMT
A
317 3FORMIC ACID
lig 8
FMT
A
324 3FORMIC ACID
lig 9
GOL
A
328 6GLYCEROL
lig 10
GOL
A
330 6GLYCEROL
lig 11
GOL
A
331 6GLYCEROL
lig 12
NA
B
303 1SODIUM ION
lig 13
FMT
B
307 3FORMIC ACID
lig 14
FMT
B
308 3FORMIC ACID
lig 15
NA
C
302 1SODIUM ION
lig 16
FMT
C
309 3FORMIC ACID
lig 17
FMT
C
310 3FORMIC ACID
lig 18
FMT
C
313 3FORMIC ACID
lig 19
FMT
C
318 3FORMIC ACID
lig 20
FMT
C
319 3FORMIC ACID
lig 21
FMT
C
321 3FORMIC ACID
lig 22
FMT
C
323 3FORMIC ACID
lig 23
FMT
C
325 3FORMIC ACID
lig 24
GOL
C
326 6GLYCEROL
lig 25
NA
D
304 1SODIUM ION
lig 26
FMT
D
311 3FORMIC ACID
lig 27
FMT
D
312 3FORMIC ACID
lig 28
FMT
D
320 3FORMIC ACID
lig 29
FMT
D
322 3FORMIC ACID
lig 30
GOL
D
327 6GLYCEROL
lig 31
GOL
D
329 6GLYCEROL