Analysis of Ligand-Protein Contacts in PDB entry:
2DGM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 53 ligands in PDB entry 2DGM. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
IOD
A
2331 1IODIDE ION
lig 2
IOD
A
2337 1IODIDE ION
lig 3
IOD
A
2343 1IODIDE ION
lig 4
IOD
A
2349 1IODIDE ION
lig 5
IOD
A
2355 1IODIDE ION
lig 6
IOD
A
2361 1IODIDE ION
lig 7
PLP
A
500 15PYRIDOXAL-5'-PHOSPHATE
lig 8
FMT
A
2550 3FORMIC ACID
lig 9
FMT
A
2560 3FORMIC ACID
lig 10
FMT
A
2600 3FORMIC ACID
lig 11
IOD
B
2332 1IODIDE ION
lig 12
IOD
B
2333 1IODIDE ION
lig 13
IOD
B
2338 1IODIDE ION
lig 14
IOD
B
2344 1IODIDE ION
lig 15
IOD
B
2350 1IODIDE ION
lig 16
IOD
B
2356 1IODIDE ION
lig 17
PLP
B
500 15PYRIDOXAL-5'-PHOSPHATE
lig 18
FMT
B
2650 3FORMIC ACID
lig 19
IOD
C
2339 1IODIDE ION
lig 20
IOD
C
2345 1IODIDE ION
lig 21
IOD
C
2351 1IODIDE ION
lig 22
IOD
C
2357 1IODIDE ION
lig 23
PLP
C
501 15PYRIDOXAL-5'-PHOSPHATE
lig 24
FMT
C
2610 3FORMIC ACID
lig 25
IOD
D
2334 1IODIDE ION
lig 26
IOD
D
2340 1IODIDE ION
lig 27
IOD
D
2346 1IODIDE ION
lig 28
IOD
D
2352 1IODIDE ION
lig 29
IOD
D
2358 1IODIDE ION
lig 30
IOD
D
2362 1IODIDE ION
lig 31
PLP
D
501 15PYRIDOXAL-5'-PHOSPHATE
lig 32
FMT
D
2570 3FORMIC ACID
lig 33
FMT
D
2580 3FORMIC ACID
lig 34
FMT
D
2630 3FORMIC ACID
lig 35
IOD
E
2335 1IODIDE ION
lig 36
IOD
E
2341 1IODIDE ION
lig 37
IOD
E
2347 1IODIDE ION
lig 38
IOD
E
2353 1IODIDE ION
lig 39
IOD
E
2359 1IODIDE ION
lig 40
PLP
E
502 15PYRIDOXAL-5'-PHOSPHATE
lig 41
FMT
E
2620 3FORMIC ACID
lig 42
ACY
E
2519 4ACETIC ACID
lig 43
PEG
E
2833 7DI(HYDROXYETHYL)ETHER
lig 44
IOD
F
2336 1IODIDE ION
lig 45
IOD
F
2342 1IODIDE ION
lig 46
IOD
F
2348 1IODIDE ION
lig 47
IOD
F
2354 1IODIDE ION
lig 48
IOD
F
2360 1IODIDE ION
lig 49
PLP
F
502 15PYRIDOXAL-5'-PHOSPHATE
lig 50
FMT
F
2590 3FORMIC ACID
lig 51
FMT
F
2640 3FORMIC ACID
lig 52
FMT
F
2660 3FORMIC ACID
lig 53
FMT
F
2670 3FORMIC ACID