Analysis of Ligand-Protein Contacts in PDB entry:
2DYS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 64 ligands in PDB entry 2DYS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
SAC
I
1 9N-ACETYL-SERINE
lig 5
FME
N
1 10N-FORMYLMETHIONINE
lig 6
FME
O
1 10N-FORMYLMETHIONINE
lig 7
TPO
T
11 11PHOSPHOTHREONINE
lig 8
SAC
V
1 9N-ACETYL-SERINE
lig 9
CU
A
601 1COPPER (II) ION
lig 10
MG
A
602 1MAGNESIUM ION
lig 11
NA
A
603 1SODIUM ION
lig 12
HEA
A
604 60HEME-A
lig 13
HEA
A
605 60HEME-A
lig 14
PGV
A
606 51 OCTADEC-11-ENOATE
lig 15
PGV
A
607 51 OCTADEC-11-ENOATE
lig 16
CUA
B
301 2DINUCLEAR COPPER ION
lig 17
TGL
B
302 63TRISTEAROYLGLYCEROL
lig 18
PSC
B
303 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 19
CHD
B
304 29CHOLIC ACID
lig 20
DCW
C
301 16DICYCLOHEXYLUREA
lig 21
DMU
C
302 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 22
UNX
C
303 1UNKNOWN ATOM OR ION
lig 23
CHD
C
304 29CHOLIC ACID
lig 24
PEK
C
305 53 11,14-TETRAENOATE
lig 25
PEK
C
306 53 11,14-TETRAENOATE
lig 26
PGV
C
307 51 OCTADEC-11-ENOATE
lig 27
PGV
C
308 51 OCTADEC-11-ENOATE
lig 28
CDL
C
309 100CARDIOLIPIN
lig 29
CHD
C
310 29CHOLIC ACID
lig 30
TGL
D
201 63TRISTEAROYLGLYCEROL
lig 31
ZN
F
101 1ZINC ION
lig 32
CDL
G
101 100CARDIOLIPIN
lig 33
PEK
G
102 53 11,14-TETRAENOATE
lig 34
CHD
J
101 29CHOLIC ACID
lig 35
TGL
L
101 63TRISTEAROYLGLYCEROL
lig 36
DMU
M
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 37
CU
N
601 1COPPER (II) ION
lig 38
MG
N
602 1MAGNESIUM ION
lig 39
NA
N
603 1SODIUM ION
lig 40
HEA
N
604 60HEME-A
lig 41
HEA
N
605 60HEME-A
lig 42
TGL
N
606 63TRISTEAROYLGLYCEROL
lig 43
TGL
N
607 63TRISTEAROYLGLYCEROL
lig 44
PGV
N
608 51 OCTADEC-11-ENOATE
lig 45
PGV
N
609 51 OCTADEC-11-ENOATE
lig 46
CUA
O
301 2DINUCLEAR COPPER ION
lig 47
CHD
O
302 29CHOLIC ACID
lig 48
TGL
O
303 63TRISTEAROYLGLYCEROL
lig 49
PSC
O
304 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 50
DMU
P
302 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 51
UNX
P
303 1UNKNOWN ATOM OR ION
lig 52
DCW
P
301 16DICYCLOHEXYLUREA
lig 53
CHD
P
304 29CHOLIC ACID
lig 54
PEK
P
305 53 11,14-TETRAENOATE
lig 55
PEK
P
306 53 11,14-TETRAENOATE
lig 56
PGV
P
307 51 OCTADEC-11-ENOATE
lig 57
PGV
P
308 51 OCTADEC-11-ENOATE
lig 58
CDL
P
309 100CARDIOLIPIN
lig 59
CHD
P
310 29CHOLIC ACID
lig 60
ZN
S
101 1ZINC ION
lig 61
PEK
T
101 53 11,14-TETRAENOATE
lig 62
CDL
T
102 100CARDIOLIPIN
lig 63
CHD
W
101 29CHOLIC ACID
lig 64
DMU
Z
101 33DECYL-BETA-D-MALTOPYRANOSIDE