Analysis of Ligand-Protein Contacts in PDB entry:
2PDO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 14 ligands in PDB entry 2PDO. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
ZN
B
601 1ZINC ION
lig 2
ZN
B
604 1ZINC ION
lig 3
ACY
B
607 4ACETIC ACID
lig 4
EDO
D
608 41,2-ETHANEDIOL
lig 5
ZN
E
602 1ZINC ION
lig 6
EDO
E
614 41,2-ETHANEDIOL
lig 7
EDO
F
609 41,2-ETHANEDIOL
lig 8
EDO
F
610 41,2-ETHANEDIOL
lig 9
EDO
F
612 41,2-ETHANEDIOL
lig 10
ZN
G
603 1ZINC ION
lig 11
ZN
H
605 1ZINC ION
lig 12
EDO
H
611 41,2-ETHANEDIOL
lig 13
EDO
H
613 41,2-ETHANEDIOL
lig 14
ACY
H
606 4ACETIC ACID