Analysis of Ligand-Protein Contacts in PDB entry:
2PMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 9 ligands in PDB entry 2PMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GDP
A
416 28GUANOSINE-5'-DIPHOSPHATE
lig 2
GNP
A
417 32PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTE
lig 3
PPV
A
418 9PYROPHOSPHATE
lig 4
PPV
A
419 9PYROPHOSPHATE
lig 5
PPV
A
420 9PYROPHOSPHATE
lig 6
GDP
B
416 28GUANOSINE-5'-DIPHOSPHATE
lig 7
PPV
B
417 9PYROPHOSPHATE
lig 8
PPV
B
418 9PYROPHOSPHATE
lig 9
PPV
B
419 9PYROPHOSPHATE