Analysis of Ligand-Protein Contacts in PDB entry:
2VDC


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 42 ligands in PDB entry 2VDC. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OMT
A
2473 11S-DIOXYMETHIONINE
lig 2
FMN
A
2474 31FLAVIN MONONUCLEOTIDE
lig 3
AKG
A
2475 102-OXOGLUTARIC ACID
lig 4
F3S
A
2476 7FE3-S4 CLUSTER
lig 5
OMT
B
2473 11S-DIOXYMETHIONINE
lig 6
FMN
B
2474 31FLAVIN MONONUCLEOTIDE
lig 7
AKG
B
2475 102-OXOGLUTARIC ACID
lig 8
F3S
B
2476 7FE3-S4 CLUSTER
lig 9
OMT
C
2473 11S-DIOXYMETHIONINE
lig 10
FMN
C
2474 31FLAVIN MONONUCLEOTIDE
lig 11
AKG
C
2475 102-OXOGLUTARIC ACID
lig 12
F3S
C
2476 7FE3-S4 CLUSTER
lig 13
OMT
D
2473 11S-DIOXYMETHIONINE
lig 14
FMN
D
2474 31FLAVIN MONONUCLEOTIDE
lig 15
AKG
D
2475 102-OXOGLUTARIC ACID
lig 16
F3S
D
2476 7FE3-S4 CLUSTER
lig 17
OMT
E
2473 11S-DIOXYMETHIONINE
lig 18
FMN
E
2474 31FLAVIN MONONUCLEOTIDE
lig 19
AKG
E
2475 102-OXOGLUTARIC ACID
lig 20
F3S
E
2476 7FE3-S4 CLUSTER
lig 21
OMT
F
2473 11S-DIOXYMETHIONINE
lig 22
FMN
F
2474 31FLAVIN MONONUCLEOTIDE
lig 23
AKG
F
2475 102-OXOGLUTARIC ACID
lig 24
F3S
F
2476 7FE3-S4 CLUSTER
lig 25
SF4
G
482 8IRON/SULFUR CLUSTER
lig 26
SF4
G
483 8IRON/SULFUR CLUSTER
lig 27
FAD
G
484 53FLAVIN-ADENINE DINUCLEOTIDE
lig 28
SF4
H
482 8IRON/SULFUR CLUSTER
lig 29
SF4
H
483 8IRON/SULFUR CLUSTER
lig 30
FAD
H
484 53FLAVIN-ADENINE DINUCLEOTIDE
lig 31
SF4
I
482 8IRON/SULFUR CLUSTER
lig 32
SF4
I
483 8IRON/SULFUR CLUSTER
lig 33
FAD
I
484 53FLAVIN-ADENINE DINUCLEOTIDE
lig 34
SF4
J
482 8IRON/SULFUR CLUSTER
lig 35
SF4
J
483 8IRON/SULFUR CLUSTER
lig 36
FAD
J
484 53FLAVIN-ADENINE DINUCLEOTIDE
lig 37
SF4
K
482 8IRON/SULFUR CLUSTER
lig 38
SF4
K
483 8IRON/SULFUR CLUSTER
lig 39
FAD
K
484 53FLAVIN-ADENINE DINUCLEOTIDE
lig 40
SF4
L
482 8IRON/SULFUR CLUSTER
lig 41
SF4
L
483 8IRON/SULFUR CLUSTER
lig 42
FAD
L
484 53FLAVIN-ADENINE DINUCLEOTIDE