Analysis of Ligand-Protein Contacts in PDB entry:
2VDH

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 121 ligands in PDB entry 2VDH. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	HYP	A	104	8	4-HYDROXYPROLINE
lig 2	HYP	A	151	8	4-HYDROXYPROLINE
lig 3	KCX	A	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 4	SMC	A	256	7	S-METHYLCYSTEINE
lig 5	SMC	A	369	7	S-METHYLCYSTEINE
lig 6	HYP	B	104	8	4-HYDROXYPROLINE
lig 7	HYP	B	151	8	4-HYDROXYPROLINE
lig 8	KCX	B	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 9	SMC	B	256	7	S-METHYLCYSTEINE
lig 10	SMC	B	369	7	S-METHYLCYSTEINE
lig 11	HYP	C	104	8	4-HYDROXYPROLINE
lig 12	HYP	C	151	8	4-HYDROXYPROLINE
lig 13	KCX	C	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 14	SMC	C	256	7	S-METHYLCYSTEINE
lig 15	SMC	C	369	7	S-METHYLCYSTEINE
lig 16	HYP	D	104	8	4-HYDROXYPROLINE
lig 17	HYP	D	151	8	4-HYDROXYPROLINE
lig 18	KCX	D	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 19	SMC	D	256	7	S-METHYLCYSTEINE
lig 20	SMC	D	369	7	S-METHYLCYSTEINE
lig 21	HYP	E	104	8	4-HYDROXYPROLINE
lig 22	HYP	E	151	8	4-HYDROXYPROLINE
lig 23	KCX	E	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 24	SMC	E	256	7	S-METHYLCYSTEINE
lig 25	SMC	E	369	7	S-METHYLCYSTEINE
lig 26	HYP	F	104	8	4-HYDROXYPROLINE
lig 27	HYP	F	151	8	4-HYDROXYPROLINE
lig 28	KCX	F	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 29	SMC	F	256	7	S-METHYLCYSTEINE
lig 30	SMC	F	369	7	S-METHYLCYSTEINE
lig 31	HYP	G	104	8	4-HYDROXYPROLINE
lig 32	HYP	G	151	8	4-HYDROXYPROLINE
lig 33	KCX	G	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 34	SMC	G	256	7	S-METHYLCYSTEINE
lig 35	SMC	G	369	7	S-METHYLCYSTEINE
lig 36	HYP	H	104	8	4-HYDROXYPROLINE
lig 37	HYP	H	151	8	4-HYDROXYPROLINE
lig 38	KCX	H	201	12	LYSINE NZ-CARBOXYLIC ACID
lig 39	SMC	H	256	7	S-METHYLCYSTEINE
lig 40	SMC	H	369	7	S-METHYLCYSTEINE
lig 41	MME	I	1	9	N-METHYL METHIONINE
lig 42	MME	J	1	9	N-METHYL METHIONINE
lig 43	MME	K	1	9	N-METHYL METHIONINE
lig 44	MME	L	1	9	N-METHYL METHIONINE
lig 45	MME	M	1	9	N-METHYL METHIONINE
lig 46	MME	N	1	9	N-METHYL METHIONINE
lig 47	MME	O	1	9	N-METHYL METHIONINE
lig 48	MME	P	1	9	N-METHYL METHIONINE
lig 49	MG	A	1476	1	MAGNESIUM ION
lig 50	CAP	A	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 51	EDO	A	1478	4	1,2-ETHANEDIOL
lig 52	EDO	A	1479	4	1,2-ETHANEDIOL
lig 53	EDO	A	1480	4	1,2-ETHANEDIOL
lig 54	EDO	A	1481	4	1,2-ETHANEDIOL
lig 55	EDO	A	1482	4	1,2-ETHANEDIOL
lig 56	EDO	A	1483	4	1,2-ETHANEDIOL
lig 57	MG	B	1476	1	MAGNESIUM ION
lig 58	CAP	B	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 59	EDO	B	1478	4	1,2-ETHANEDIOL
lig 60	EDO	B	1479	4	1,2-ETHANEDIOL
lig 61	EDO	B	1480	4	1,2-ETHANEDIOL
lig 62	EDO	B	1481	4	1,2-ETHANEDIOL
lig 63	EDO	B	1482	4	1,2-ETHANEDIOL
lig 64	MG	C	1476	1	MAGNESIUM ION
lig 65	CAP	C	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 66	EDO	C	1478	4	1,2-ETHANEDIOL
lig 67	EDO	C	1479	4	1,2-ETHANEDIOL
lig 68	EDO	C	1480	4	1,2-ETHANEDIOL
lig 69	EDO	C	1481	4	1,2-ETHANEDIOL
lig 70	EDO	C	1482	4	1,2-ETHANEDIOL
lig 71	EDO	C	1483	4	1,2-ETHANEDIOL
lig 72	MG	D	1476	1	MAGNESIUM ION
lig 73	CAP	D	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 74	EDO	D	1478	4	1,2-ETHANEDIOL
lig 75	EDO	D	1479	4	1,2-ETHANEDIOL
lig 76	EDO	D	1480	4	1,2-ETHANEDIOL
lig 77	EDO	D	1481	4	1,2-ETHANEDIOL
lig 78	EDO	D	1482	4	1,2-ETHANEDIOL
lig 79	MG	E	1476	1	MAGNESIUM ION
lig 80	CAP	E	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 81	EDO	E	1478	4	1,2-ETHANEDIOL
lig 82	EDO	E	1479	4	1,2-ETHANEDIOL
lig 83	EDO	E	1480	4	1,2-ETHANEDIOL
lig 84	EDO	E	1481	4	1,2-ETHANEDIOL
lig 85	EDO	E	1482	4	1,2-ETHANEDIOL
lig 86	EDO	E	1483	4	1,2-ETHANEDIOL
lig 87	MG	F	1476	1	MAGNESIUM ION
lig 88	CAP	F	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 89	EDO	F	1478	4	1,2-ETHANEDIOL
lig 90	EDO	F	1479	4	1,2-ETHANEDIOL
lig 91	EDO	F	1480	4	1,2-ETHANEDIOL
lig 92	EDO	F	1481	4	1,2-ETHANEDIOL
lig 93	EDO	F	1482	4	1,2-ETHANEDIOL
lig 94	EDO	F	1483	4	1,2-ETHANEDIOL
lig 95	MG	G	1476	1	MAGNESIUM ION
lig 96	CAP	G	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 97	EDO	G	1478	4	1,2-ETHANEDIOL
lig 98	EDO	G	1479	4	1,2-ETHANEDIOL
lig 99	EDO	G	1480	4	1,2-ETHANEDIOL
lig 100	EDO	G	1481	4	1,2-ETHANEDIOL
lig 101	EDO	G	1482	4	1,2-ETHANEDIOL
lig 102	MG	H	1476	1	MAGNESIUM ION
lig 103	CAP	H	1477	21	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 104	EDO	H	1478	4	1,2-ETHANEDIOL
lig 105	EDO	H	1479	4	1,2-ETHANEDIOL
lig 106	EDO	H	1480	4	1,2-ETHANEDIOL
lig 107	EDO	H	1481	4	1,2-ETHANEDIOL
lig 108	EDO	H	1482	4	1,2-ETHANEDIOL
lig 109	EDO	H	1483	4	1,2-ETHANEDIOL
lig 110	EDO	I	1141	4	1,2-ETHANEDIOL
lig 111	EDO	J	1141	4	1,2-ETHANEDIOL
lig 112	EDO	J	1142	4	1,2-ETHANEDIOL
lig 113	EDO	K	1141	4	1,2-ETHANEDIOL
lig 114	EDO	K	1142	4	1,2-ETHANEDIOL
lig 115	EDO	L	1141	4	1,2-ETHANEDIOL
lig 116	EDO	M	1141	4	1,2-ETHANEDIOL
lig 117	EDO	M	1142	4	1,2-ETHANEDIOL
lig 118	EDO	N	1141	4	1,2-ETHANEDIOL
lig 119	EDO	N	1142	4	1,2-ETHANEDIOL
lig 120	EDO	O	1141	4	1,2-ETHANEDIOL
lig 121	EDO	O	1142	4	1,2-ETHANEDIOL

Analysis of Ligand-Protein Contacts in PDB entry: 2VDH

Analysis of Ligand-Protein Contacts in PDB entry:
2VDH