Analysis of Ligand-Protein Contacts in PDB entry:
2VDN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 27 ligands in PDB entry 2VDN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MPT
C
1 5BETA-MERCAPTOPROPIONIC ACID
lig 2
HRG
C
2 12L-HOMOARGININE
lig 3
NH2
C
8 1AMINO GROUP
lig 4
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
D
4 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
D
5 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
MAN
E
3 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 13
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
E
6 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
E
7 11ALPHA-D-MANNOPYRANOSE
lig 16
GOL
A
1453 6GLYCEROL
lig 17
CA
A
2004 1CALCIUM ION
lig 18
CA
A
2005 1CALCIUM ION
lig 19
CA
A
2006 1CALCIUM ION
lig 20
CA
A
2007 1CALCIUM ION
lig 21
NAG
A
3015 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
A
3249 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
GOL
B
1462 6GLYCEROL
lig 24
MG
B
2001 1MAGNESIUM ION
lig 25
CA
B
2002 1CALCIUM ION
lig 26
CA
B
2003 1CALCIUM ION
lig 27
NAG
B
3099 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE