Analysis of Ligand-Protein Contacts in PDB entry:
2VGD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 11 ligands in PDB entry 2VGD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
XYP
B
1 10BETA-D-XYLOPYRANOSE
lig 2
XYP
B
2 9BETA-D-XYLOPYRANOSE
lig 3
XYP
B
3 9BETA-D-XYLOPYRANOSE
lig 4
XYP
C
1 10BETA-D-XYLOPYRANOSE
lig 5
XYP
C
2 9BETA-D-XYLOPYRANOSE
lig 6
NA
A
1196 1SODIUM ION
lig 7
FX3
A
1200 22 ALPHA-L-RIBOFURANOSE
lig 8
GOL
A
1201 6GLYCEROL
lig 9
GOL
A
1202 6GLYCEROL
lig 10
GOL
A
1203 6GLYCEROL
lig 11
GOL
A
1204 6GLYCEROL