Analysis of Ligand-Protein Contacts in PDB entry:
2VNF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 9 ligands in PDB entry 2VNF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
M3L
B
4 12N-TRIMETHYLLYSINE
lig 2
M3L
D
4 12N-TRIMETHYLLYSINE
lig 3
NA
A
300 1SODIUM ION
lig 4
DTT
A
1245 82,3-DIHYDROXY-1,4-DITHIOBUTANE
lig 5
ZN
A
1246 1ZINC ION
lig 6
ZN
A
1247 1ZINC ION
lig 7
DTU
C
1246 8(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
lig 8
ZN
C
1247 1ZINC ION
lig 9
ZN
C
1248 1ZINC ION