Analysis of Ligand-Protein Contacts in PDB entry:
2YBP


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 9 ligands in PDB entry 2YBP. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
M3L
C
36 12N-TRIMETHYLLYSINE
lig 2
M3L
D
36 12N-TRIMETHYLLYSINE
lig 3
NI
A
1356 1NICKEL (II) ION
lig 4
ZN
A
1357 1ZINC ION
lig 5
GOL
A
1358 6GLYCEROL
lig 6
2HG
A
1359 10(2R)-2-HYDROXYPENTANEDIOIC ACID
lig 7
NI
B
1356 1NICKEL (II) ION
lig 8
ZN
B
1357 1ZINC ION
lig 9
2HG
B
1358 10(2R)-2-HYDROXYPENTANEDIOIC ACID