Analysis of Ligand-Protein Contacts in PDB entry:
2YP3


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 15 ligands in PDB entry 2YP3. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
D
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
GAL
D
2 11BETA-D-GALACTOPYRANOSE
lig 8
SIA
D
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 9
NAG
A
1504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
A
1505 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
A
1506 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
A
1510 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
EPE
A
1513 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 14
EPE
A
1514 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 15
TAM
A
1518 11TRIS(HYDROXYETHYL)AMINOMETHANE