Analysis of Ligand-Protein Contacts in PDB entry:
2YP9


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 16 ligands in PDB entry 2YP9. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
A
1038 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
1063 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
A
1126 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
A
1133 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
A
1285 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
EPE
A
1504 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 12
EPE
A
1505 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 13
EPE
A
1506 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 14
TAM
A
1507 11TRIS(HYDROXYETHYL)AMINOMETHANE
lig 15
SIA
A
1508 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 16
CMO
A
1509 2CARBON MONOXIDE