Analysis of Ligand-Protein Contacts in PDB entry:
2AFH


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 28 ligands in PDB entry 2AFH. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HCA
A
2494 143-HYDROXY-3-CARBOXY-ADIPIC ACID
lig 2
CFN
A
2496 18FE(7)-MO-S(9)-N CLUSTER
lig 3
PGE
A
5012 10TRIETHYLENE GLYCOL
lig 4
PGE
A
5015 10TRIETHYLENE GLYCOL
lig 5
CA
B
2491 1CALCIUM ION
lig 6
NA
B
2492 1SODIUM ION
lig 7
CLF
B
2498 15FE(8)-S(7) CLUSTER
lig 8
TRS
B
5003 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 9
PGE
B
5005 10TRIETHYLENE GLYCOL
lig 10
PG4
B
5014 13TETRAETHYLENE GLYCOL
lig 11
1PE
B
5017 16PENTAETHYLENE GLYCOL
lig 12
PEG
B
5018 7DI(HYDROXYETHYL)ETHER
lig 13
HCA
C
3494 143-HYDROXY-3-CARBOXY-ADIPIC ACID
lig 14
CFN
C
3496 18FE(7)-MO-S(9)-N CLUSTER
lig 15
CLF
C
3498 15FE(8)-S(7) CLUSTER
lig 16
TRS
C
5004 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 17
PGE
C
5011 10TRIETHYLENE GLYCOL
lig 18
1PE
C
5013 16PENTAETHYLENE GLYCOL
lig 19
PGE
C
5016 10TRIETHYLENE GLYCOL
lig 20
CA
D
2490 1CALCIUM ION
lig 21
PGE
D
5006 10TRIETHYLENE GLYCOL
lig 22
PGE
D
5008 10TRIETHYLENE GLYCOL
lig 23
P6G
D
5009 19HEXAETHYLENE GLYCOL
lig 24
PGE
D
5010 10TRIETHYLENE GLYCOL
lig 25
PEG
D
5019 7DI(HYDROXYETHYL)ETHER
lig 26
PEG
D
5020 7DI(HYDROXYETHYL)ETHER
lig 27
SF4
E
3290 8IRON/SULFUR CLUSTER
lig 28
PG4
E
5007 13TETRAETHYLENE GLYCOL