Analysis of Ligand-Protein Contacts in PDB entry:
2AGD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 41 ligands in PDB entry 2AGD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
BMA
D
1 12BETA-D-MANNOPYRANOSE
lig 2
MAN
D
2 11ALPHA-D-MANNOPYRANOSE
lig 3
NAG
D
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
BMA
E
1 12BETA-D-MANNOPYRANOSE
lig 5
MAN
E
2 11ALPHA-D-MANNOPYRANOSE
lig 6
NAG
E
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
F
1 12BETA-D-MANNOPYRANOSE
lig 8
MAN
F
2 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
F
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
MN
A
400 1MANGANESE (II) ION
lig 11
SO4
A
422 5SULFATE ION
lig 12
SO4
A
423 5SULFATE ION
lig 13
SO4
A
424 5SULFATE ION
lig 14
SO4
A
433 5SULFATE ION
lig 15
UDH
A
399 326-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
lig 16
GOL
A
417 6GLYCEROL
lig 17
GOL
A
420 6GLYCEROL
lig 18
GOL
A
421 6GLYCEROL
lig 19
MN
B
402 1MANGANESE (II) ION
lig 20
SO4
B
425 5SULFATE ION
lig 21
SO4
B
426 5SULFATE ION
lig 22
SO4
B
428 5SULFATE ION
lig 23
SO4
B
429 5SULFATE ION
lig 24
SO4
B
432 5SULFATE ION
lig 25
SO4
B
434 5SULFATE ION
lig 26
SO4
B
437 5SULFATE ION
lig 27
UDH
B
401 326-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
lig 28
GOL
B
414 6GLYCEROL
lig 29
GOL
B
415 6GLYCEROL
lig 30
GOL
B
416 6GLYCEROL
lig 31
GOL
B
419 6GLYCEROL
lig 32
MN
C
404 1MANGANESE (II) ION
lig 33
SO4
C
427 5SULFATE ION
lig 34
SO4
C
430 5SULFATE ION
lig 35
SO4
C
431 5SULFATE ION
lig 36
SO4
C
435 5SULFATE ION
lig 37
SO4
C
436 5SULFATE ION
lig 38
UDH
C
403 326-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
lig 39
DIO
C
438 61,4-DIETHYLENE DIOXIDE
lig 40
MES
C
439 122-(N-MORPHOLINO)-ETHANESULFONIC ACID
lig 41
GOL
C
418 6GLYCEROL