Analysis of Ligand-Protein Contacts in PDB entry:
2CDO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 49 ligands in PDB entry 2CDO. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
GAL
E
1 12BETA-D-GALACTOPYRANOSE
lig 2
AAL
E
2 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 3
GAL
E
3 11BETA-D-GALACTOPYRANOSE
lig 4
AAL
E
4 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 5
GAL
E
5 11BETA-D-GALACTOPYRANOSE
lig 6
AAL
E
6 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 7
GAL
F
1 12BETA-D-GALACTOPYRANOSE
lig 8
AAL
F
2 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 9
GAL
F
3 11BETA-D-GALACTOPYRANOSE
lig 10
AAL
F
4 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 11
GAL
F
5 11BETA-D-GALACTOPYRANOSE
lig 12
AAL
F
6 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 13
GAL
G
1 12BETA-D-GALACTOPYRANOSE
lig 14
AAL
G
2 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 15
GAL
G
3 11BETA-D-GALACTOPYRANOSE
lig 16
AAL
G
4 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 17
GAL
G
5 11BETA-D-GALACTOPYRANOSE
lig 18
AAL
G
6 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 19
GAL
H
1 12BETA-D-GALACTOPYRANOSE
lig 20
AAL
H
2 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 21
GAL
H
3 11BETA-D-GALACTOPYRANOSE
lig 22
AAL
H
4 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 23
GAL
H
5 11BETA-D-GALACTOPYRANOSE
lig 24
AAL
H
6 103,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE
lig 25
CA
A
1139 1CALCIUM ION
lig 26
CA
A
1140 1CALCIUM ION
lig 27
CL
A
1141 1CHLORIDE ION
lig 28
CL
A
1142 1CHLORIDE ION
lig 29
CL
A
1143 1CHLORIDE ION
lig 30
CA
B
1139 1CALCIUM ION
lig 31
CA
B
1140 1CALCIUM ION
lig 32
EDO
B
1141 41,2-ETHANEDIOL
lig 33
EDO
B
1142 41,2-ETHANEDIOL
lig 34
CL
B
1143 1CHLORIDE ION
lig 35
CL
B
1144 1CHLORIDE ION
lig 36
EDO
B
1145 41,2-ETHANEDIOL
lig 37
CA
C
1139 1CALCIUM ION
lig 38
CA
C
1140 1CALCIUM ION
lig 39
EDO
C
1141 41,2-ETHANEDIOL
lig 40
CL
C
1142 1CHLORIDE ION
lig 41
CL
C
1143 1CHLORIDE ION
lig 42
CL
C
1144 1CHLORIDE ION
lig 43
EDO
C
1145 41,2-ETHANEDIOL
lig 44
EDO
C
1146 41,2-ETHANEDIOL
lig 45
CA
D
1139 1CALCIUM ION
lig 46
CA
D
1140 1CALCIUM ION
lig 47
CL
D
1141 1CHLORIDE ION
lig 48
CL
D
1142 1CHLORIDE ION
lig 49
EDO
D
1143 41,2-ETHANEDIOL